1.          Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). 
Cossarizza A, et al. Eur J Immunol. 2019 Oct;49(10):1457-1973. doi: 10.1002/eji.201970107. PMID: 31633216 Free PMC article.

2.          CytoNorm: A Normalization Algorithm for Cytometry Data. 
Van Gassen S, Gaudilliere B, Angst MS, Saeys Y, Aghaeepour N. Cytometry A. 2020 Mar;97(3):268-278. doi: 10.1002/cyto.a.23904. Epub 2019 Oct 21. PMID: 31633883 Free PMC article.

3.          Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities. 
Davis KD, Aghaeepour N, Ahn AH, Angst MS, Borsook D, Brenton A, Burczynski ME, Crean C, Edwards R, Gaudilliere B, Hergenroeder GW, Iadarola MJ, Iyengar S, Jiang Y, Kong JT, Mackey S, Saab CY, Sang CN, Scholz J, Segerdahl M, Tracey I, Veasley C, Wang J, Wager TD, Wasan AD, Pelleymounter MA. Nat Rev Neurol. 2020 Jul;16(7):381-400. doi: 10.1038/s41582-020-0362-2. Epub 2020 Jun 15. PMID: 32541893 Free PMC article. Review.

4.          Multiomic immune clockworks of pregnancy. 

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. PMID: 32020337 Free PMC article. Review.

5.          Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops. 

Czechowska K, Lannigan J, Aghaeepour N, Back JB, Begum J, Behbehani G, Bispo C, Bitoun D, Fernández AB, Boova ST, Brinkman RR, Ciccolella CO, Cotleur B, Davies D, Dela Cruz GV, Del Rio-Guerra R, Des Lauriers-Cox AM, Douagi I, Dumrese C, Bonilla Escobar DL, Estevam J, Ewald C, Fossum A, Gaudillière B, Green C, Groves C, Hall C, Haque Y, Hedrick MN, Hogg K, Hsieh EWY, Irish J, Lederer J, Leipold M, Lewis-Tuffin LJ, Litwin V, Lopez P, Nasdala I, Nedbal J, Ohlsson-Wilhelm BM, Price KM, Rahman AH, Rayanki R, Rieger AM, Robinson JP, Shapiro H, Sun YS, Tang VA, Tesfa L, Telford WG, Walker R, Welsh JA, Wheeler P, Tárnok A. Cytometry A. 2019 Dec;95(12):1236-1274. doi: 10.1002/cyto.a.23941. PMID: 31833655 No abstract available.

6.          Changes in pregnancy-related serum biomarkers early in gestation are associated with later development of preeclampsia. 

Hao S, You J, Chen L, Zhao H, Huang Y, Zheng L, Tian L, Maric I, Liu X, Li T, Bianco YK, Winn VD, Aghaeepour N, Gaudilliere B, Angst MS, Zhou X, Li YM, Mo L, Wong RJ, Shaw GM, Stevenson DK, Cohen HJ, Mcelhinney DB, Sylvester KG, Ling XB. PLoS One. 2020 Mar 3;15(3):e0230000. doi: 10.1371/journal.pone.0230000. eCollection 2020. PMID: 32126118 Free PMC article.

7.          Landscape of coordinated immune responses to H1N1 challenge in humans. 

Rahil Z, Leylek R, Schürch CM, Chen H, Bjornson-Hooper Z, Christensen SR, Gherardini PF, Bhate SS, Spitzer MH, Fragiadakis GK, Mukherjee N, Kim N, Jiang S, Yo J, Gaudilliere B, Affrime M, Bock B, Hensley SE, Idoyaga J, Aghaeepour N, Kim K, Nolan GP, McIlwain DR. J Clin Invest. 2020 Nov 2;130(11):5800-5816. doi: 10.1172/JCI137265. PMID: 33044226

8.          Towards personalized medicine in maternal and child health: integrating biologic and social determinants. 

Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, Mayo JA, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Sirota M, Snyder MP, Sylvester KG, Hao S, Wise PH, Shaw GM, Katz M. Pediatr Res. 2020 May 26. doi: 10.1038/s41390-020-0981-8. Online ahead of print. PMID: 32454518 No abstract available.

9.          VoPo leverages cellular heterogeneity for predictive modeling of single-cell data. 

Stanley N, Stelzer IA, Tsai AS, Fallahzadeh R, Ganio E, Becker M, Phongpreecha T, Nassar H, Ghaemi S, Maric I, Culos A, Chang AL, Xenochristou M, Han X, Espinosa C, Rumer K, Peterson L, Verdonk F, Gaudilliere D, Tsai E, Feyaerts D, Einhaus J, Ando K, Wong RJ, Obermoser G, Shaw GM, Stevenson DK, Angst MS, Gaudilliere B, Aghaeepour N. Nat Commun. 2020 Jul 27;11(1):3738. doi: 10.1038/s41467-020-17569-8. PMID: 32719375 Free PMC article.

10.     Effects of Selective Exclusion of Patients on Preterm Birth Test Performance. 

McElrath TF, Cantonwine D, Stevenson DK, Shaw GM, Aghaeepour N, Quake S. Obstet Gynecol. 2020 May;135(5):1228-1229. doi: 10.1097/AOG.0000000000003855. PMID: 32332399 No abstract available.

11.     Author Correction: Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma. 

Ganio EA, Stanley N, Lindberg-Larsen V, Einhaus J, Tsai AS, Verdonk F, Culos A, Ghaemi S, Rumer KK, Stelzer IA, Gaudilliere D, Tsai E, Fallahzadeh R, Choisy B, Kehlet H, Aghaeepour N, Angst MS, Gaudilliere B. Nat Commun. 2020 Sep 3;11(1):4495. doi: 10.1038/s41467-020-18410-y. PMID: 32883978 Free PMC article.

1.          Retinoic Acid and Lymphotoxin Signaling Promote Differentiation of Human Intestinal M Cells. 

Ding S, Song Y, Brulois KF, Pan J, Co JY, Ren L, Feng N, Yasukawa LL, Sánchez-Tacuba L, Wosen JE, Mellins ED, Monack DM, Amieva MR, Kuo CJ, Butcher EC, Greenberg HB. Gastroenterology. 2020 Jul;159(1):214-226.e1. doi: 10.1053/j.gastro.2020.03.053. Epub 2020 Apr 1. PMID: 32247021

2.          Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection. 

Rajan A, Robertson MJ, Carter HE, Poole NM, Clark JR, Green SI, Criss ZK, Zhao B, Karandikar U, Xing Y, Margalef-Català M, Jain N, Wilson RL, Bai F, Hyser JM, Petrosino J, Shroyer NF, Blutt SE, Coarfa C, Song X, Prasad BV, AmievaMR, Grande-Allen J, Estes MK, Okhuysen PC, Maresso AW. PLoS Pathog. 2020 Sep 28;16(9):e1008851. doi: 10.1371/journal.ppat.1008851. eCollection 2020 Sep. PMID: 32986782 Free PMC article.

3.          IgE Effector Mechanisms, in Concert with Mast Cells, Contribute to Acquired Host Defense against Staphylococcusaureus. 

Starkl P, Watzenboeck ML, Popov LM, Zahalka S, Hladik A, Lakovits K, Radhouani M, Haschemi A, Marichal T, Reber LL, Gaudenzio N, Sibilano R, Stulik L, Fontaine F, Mueller AC, Amieva MR, Galli SJ, Knapp S. Immunity. 2020 Oct 13;53(4):793-804.e9. doi: 10.1016/j.immuni.2020.08.002. Epub 2020 Sep 9. PMID: 32910906

1.          Symptomatic SARS-CoV-2 infections display specific IgG Fc structures. 

Chakraborty S, Edwards K, Buzzanco AS, Memoli MJ, Sherwood R, Mallajosyula V, Xie MM, Gonzalez J, Buffone C, Kathale N, Providenza S, Jagannathan P, Andrews JR, Blish CA, Krammer F, Dugan H, Wilson PC, Pham TD, Boyd SD, Zhang S, Taubenberger JK, Morales T, Schapiro JM, Parsonnet J, Wang TT.

medRxiv. 2020 May 18:2020.05.15.20103341. doi: 10.1101/2020.05.15.20103341. Preprint. PMID: 32511463 Free PMC article. Updated.

2.          The risk of tuberculosis in children after close exposure: a systematic review and individual-participant meta-analysis. 

Martinez L, Cords O, Horsburgh CR, Andrews JR; Pediatric TB Contact Studies Consortium. Lancet. 2020 Mar 21;395(10228):973-984. doi: 10.1016/S0140-6736(20)30166-5. PMID: 32199484

3.          Deep learning-based automated detection algorithm for active pulmonary tuberculosis on chest radiographs: diagnostic performance in systematic screening of asymptomatic individuals. 

Lee JH, Park S, Hwang EJ, Goo JM, Lee WY, Lee S, Kim H, Andrews JR, Park CM. Eur Radiol. 2020 Aug 28. doi: 10.1007/s00330-020-07219-4. Online ahead of print. PMID: 32857202

4.          Yield, Efficiency and Costs of Mass Screening Algorithms for Tuberculosis in Brazilian Prisons. 

Santos ADS, Oliveira RD, Lemos EF, Lima F, Cohen T, Cords O, Martinez L, Gonçalves C, Ko A, Andrews JR, Croda J. Clin Infect Dis. 2020 Feb 17:ciaa135. doi: 10.1093/cid/ciaa135. Online ahead of print. PMID: 32064514

5.          The household secondary attack rate of SARS-CoV-2: A rapid review. 

Fung HF, Martinez L, Alarid-Escudero F, Salomon JA, Studdert DM, Andrews JR, Goldhaber-Fiebert JD; SC COSMO Modeling Group. Clin Infect Dis. 2020 Oct 12:ciaa1558. doi: 10.1093/cid/ciaa1558. Online ahead of print. PMID: 33045075

6.          Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences. 

Walter KS, Colijn C, Cohen T, Mathema B, Liu Q, Bowers J, Engelthaler DM, Narechania A, Lemmer D, Croda J, Andrews JR. Microb Genom. 2020 Aug;6(8):mgen000418. doi: 10.1099/mgen.0.000418. Epub 2020 Jul 31. PMID: 32735210 Free PMC article.

7.          Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response. 

Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N. Clin Infect Dis. 2020 Oct 9:ciaa1537. doi: 10.1093/cid/ciaa1537. Online ahead of print. PMID: 33035306

8.          Oral swab testing by Xpert® MTB/RIF Ultra for mass tuberculosis screening in prisons. 

Lima F, Santos AS, Oliveira RD, Silva CCR, Gonçalves CCM, Andrews JR, Croda J. J Clin Tuberc Other Mycobact Dis. 2020 Feb 4;19:100148. doi: 10.1016/j.jctube.2020.100148. eCollection 2020 May. PMID: 32099908 Free PMC article.

9.          Seasonal drivers of tuberculosis: evidence from over 100 years of notifications in Cape Town. 

Andrews JR, Cobelens F, Horsburgh CR, Hatherill M, Basu S, Hermans S, Wood R. Int J Tuberc Lung Dis. 2020 May 1;24(5):477-484. doi: 10.5588/ijtld.19.0274. PMID: 32398196

10.     Identifying priorities for testing and treatment of latent tuberculosis infection in the United States. 

Martinez L, Andrews JR. Clin Infect Dis. 2020 Jun 26:ciaa850. doi: 10.1093/cid/ciaa850. Online ahead of print. PMID: 32588882 No abstract available.

11.     Proinflammatory IgG Fc structures in patients with severe COVID-19. 

Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, Pham TD, Boyd SD, Nadeau KC, Pinsky BA, Zhang S, Memoli MJ, Taubenberger JK, Morales T, Schapiro JM, Tan GS, Jagannathan P, Wang TT. Nat Immunol. 2020 Nov 9. doi: 10.1038/s41590-020-00828-7. Online ahead of print. PMID: 33169014

1.          MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. 

Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M. Sci Adv. 2019 Oct 9;5(10):eaax5851. doi: 10.1126/sciadv.aax5851. eCollection 2019 Oct. PMID: 31633026 Free PMC article.

2.          Single-cell metabolic profiling of human cytotoxic T cells. 

Hartmann FJ, Mrdjen D, McCaffrey E, Glass DR, Greenwald NF, Bharadwaj A, Khair Z, Verberk SGS, Baranski A, Baskar R, Graf W, Van Valen D, Van den Bossche J, Angelo M, Bendall SC. Nat Biotechnol. 2020 Aug 31. doi: 10.1038/s41587-020-0651-8. Online ahead of print. PMID: 32868913

1.          Injectable Polymer-Nanoparticle Hydrogels for Local Immune Cell Recruitment. 

Fenton OS, Tibbitt MW, Appel EA, Jhunjhunwala S, Webber MJ, Langer R. Biomacromolecules. 2019 Dec 9;20(12):4430-4436. doi: 10.1021/acs.biomac.9b01129. Epub 2019 Nov 4. PMID: 31682423

2.          Universal Scaling Behavior during Network Formation in Controlled Radical Polymerizations. 

Mann JL, Rossi RL, Smith AAA, Appel EA. Macromolecules. 2019 Dec 24;52(24):9456-9465. doi: 10.1021/acs.macromol.9b02109. Epub 2019 Dec 13. PMID: 31894160 Free PMC article.

3.          A Quantitative Description for Designing the Extrudability of Shear-Thinning Physical Hydrogels. 

Lopez Hernandez H, Souza JW, Appel EA. Macromol Biosci. 2020 Nov 8:e2000295. doi: 10.1002/mabi.202000295. Online ahead of print. PMID: 33164332

4.          Injectable Hydrogels for Sustained Codelivery of Subunit Vaccines Enhance Humoral Immunity. 

Roth GA, Gale EC, Alcántara-Hernández M, Luo W, Axpe E, Verma R, Yin Q, Yu AC, Lopez Hernandez H, Maikawa CL, Smith AAA, Davis MM, Pulendran B, Idoyaga J, Appel EA. ACS Cent Sci. 2020 Oct 28;6(10):1800-1812. doi: 10.1021/acscentsci.0c00732. Epub 2020 Sep 16. PMID: 33145416 Free PMC article.

5.          Highly Branched Polydimethylacrylamide Copolymers as Functional Biomaterials. 

Mann JL, Grosskopf AK, Smith AAA, Appel EA. Biomacromolecules. 2020 Aug 4. doi: 10.1021/acs.biomac.0c00539. Online ahead of print. PMID: 32786733

6.          Nanoparticles Presenting Potent TLR7/8 Agonists Enhance Anti-PD-L1 Immunotherapy in Cancer Treatment. 

Smith AAA, Gale EC, Roth GA, Maikawa CL, Correa S, Yu AC, Appel EA. Biomacromolecules. 2020 Sep 14;21(9):3704-3712. doi: 10.1021/acs.biomac.0c00812. Epub 2020 Aug 20. PMID: 32816460 Free PMC article.

1.          Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning. 

Ho CS, Jean N, Hogan CA, Blackmon L, Jeffrey SS, Holodniy M, Banaei N, Saleh AAE, Ermon S, Dionne J. Nat Commun. 2019 Oct 30;10(1):4927. doi: 10.1038/s41467-019-12898-9. PMID: 31666527 Free PMC article.

2.          Comparing QuantiFERON-TB Gold Plus with Other Tests To Diagnose Mycobacterium tuberculosis Infection. 

Venkatappa TK, Punnoose R, Katz DJ, Higgins MP, Banaei N, Graviss EA, Belknap RW, Ho CS. J Clin Microbiol. 2019 Oct 23;57(11):e00985-19. doi: 10.1128/JCM.00985-19. Print 2019 Nov. PMID: 31462550 Free PMC article.

3.          Investigation of Preanalytical Variables Impacting Pathogen Cell-Free DNA in Blood and Urine. 

Murugesan K, Hogan CA, Palmer Z, Reeve B, Theron G, Andama A, Somoskovi A, Steadman A, Madan D, Andrews J, Croda J, Sahoo MK, Cattamanchi A, Pinsky BA, Banaei N. J Clin Microbiol. 2019 Oct 23;57(11):e00782-19. doi: 10.1128/JCM.00782-19. Print 2019 Nov. PMID: 31511335 Free PMC article.

4.          Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. 

Kang JB, Siranosian BA, Moss EL, Banaei N, Andermann TM, Bhatt AS. BMC Bioinformatics. 2019 Dec 2;20(Suppl 16):585. doi: 10.1186/s12859-019-3073-1. PMID: 31787070 Free PMC article.

5.          Clinical Impact of Metagenomic Next-Generation Sequencing of Plasma Cell-Free DNA for the Diagnosis of Infectious Diseases: A Multicenter Retrospective Cohort Study. 

Hogan CA, Yang S, Garner OB, Green DA, Gomez CA, Dien Bard J, Pinsky BA, Banaei N. Clin Infect Dis. 2020 Jan 14:ciaa035. doi: 10.1093/cid/ciaa035. Online ahead of print. PMID: 31942944

6.          Dual Reporting of Clostridioides difficile PCR and Predicted Toxin Result Based on PCR Cycle Threshold Reduces Treatment of Toxin-Negative Patients without Increases in Adverse Outcomes. 

Hitchcock MM, Holubar M, Hogan CA, Tompkins LS, Banaei N. J Clin Microbiol. 2019 Oct 23;57(11):e01288-19. doi: 10.1128/JCM.01288-19. Print 2019 Nov. PMID: 31511334 Free PMC article.

7.          Upregulation of CD47 Is a Host Checkpoint Response to Pathogen Recognition. 

Tal MC, Torrez Dulgeroff LB, Myers L, Cham LB, Mayer-Barber KD, Bohrer AC, Castro E, Yiu YY, Lopez Angel C, Pham E, Carmody AB, Messer RJ, Gars E, Kortmann J, Markovic M, Hasenkrug M, Peterson KE, Winkler CW, Woods TA, Hansen P, Galloway S, Wagh D, Fram BJ, Nguyen T, Corey D, Kalluru RS, Banaei N, Rajadas J, Monack DM, Ahmed A, Sahoo D, Davis MM, Glenn JS, Adomati T, Lang KS, Weissman IL, Hasenkrug KJ. mBio. 2020 Jun 23;11(3):e01293-20. doi: 10.1128/mBio.01293-20. PMID: 32576678 Free PMC article.

8.          A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results. 

Joshi RP, Pejaver V, Hammarlund NE, Sung H, Lee SK, Furmanchuk A, Lee HY, Scott G, Gombar S, Shah N, Shen S, Nassiri A, Schneider D, Ahmad FS, Liebovitz D, Kho A, Mooney S, Pinsky BA, Banaei N. J Clin Virol. 2020 Aug;129:104502. doi: 10.1016/j.jcv.2020.104502. Epub 2020 Jun 10. PMID: 32544861 Free PMC article.

9.          Fourth-Generation QuantiFERON-TB Gold Plus: What Is the Evidence? 

Shafeque A, Bigio J, Hogan CA, Pai M, Banaei N. J Clin Microbiol. 2020 Aug 24;58(9):e01950-19. doi: 10.1128/JCM.01950-19. Print 2020 Aug 24. PMID: 32493779 Review.

10.     Plasmonic and Electrostatic Interactions Enable Uniformly Enhanced Liquid Bacterial Surface-Enhanced Raman Scattering (SERS). 

Tadesse LF, Ho CS, Chen DH, Arami H, Banaei N, Gambhir SS, Jeffrey SS, Saleh AAE, Dionne J. Nano Lett. 2020 Oct 14;20(10):7655-7661. doi: 10.1021/acs.nanolett.0c03189. Epub 2020 Oct 4. PMID: 32914987 Free PMC article.

11.     Clinical Impact of Clostridium difficile PCR Cycle Threshold-Predicted Toxin Reporting in Pediatric Patients. 

Schwenk HT, Bio LL, Kruger JF, Banaei N. J Pediatric Infect Dis Soc. 2020 Feb 28;9(1):44-50. doi: 10.1093/jpids/piy117. PMID: 30476169

12.     Impact of Rapid Antimicrobial Susceptibility Testing in Gram-Negative Rod Bacteremia: a Quasi-experimental Study. 

Hogan CA, Ebunji B, Watz N, Kapphahn K, Rigdon J, Mui E, Meng L, Alegria W, Holubar M, Deresinski S, BanaeiN. J Clin Microbiol. 2020 Aug 24;58(9):e00360-20. doi: 10.1128/JCM.00360-20. Print 2020 Aug 24. PMID: 32434782

13.     Novel Assays/Applications for Patients Suspected of Mycobacterial Diseases. 

Banaei N, Musser KA, Salfinger M, Somoskovi A, Zelazny AM. Clin Lab Med. 2020 Dec;40(4):535-552. doi: 10.1016/j.cll.2020.08.010. Epub 2020 Oct 6. PMID: 33121621 Review.

14.     Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response. 

Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N. Clin Infect Dis. 2020 Oct 9:ciaa1537. doi:10.1093/cid/ciaa1537. Online ahead of print. PMID: 33035306

15.     Reply to Muller and Chaudhury. 

Hogan CA, Pinsky BA, Banaei N. Clin Infect Dis. 2020 Mar 4:ciaa220. doi: 10.1093/cid/ciaa220. Online ahead of print. PMID: 32140706 No abstract available.

16.     Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2. 

Ramachandran A, Huyke DA, Sharma E, Sahoo MK, Huang C, Banaei N, Pinsky BA, Santiago JG. Proc Natl Acad Sci U S A. 2020 Nov 4:202010254. doi: 10.1073/pnas.2010254117. Online ahead of print. PMID: 33148808

17.     Recurrent Multifocal Mycoplasma orale Infection in an Immunocompromised Patient: A Case Report and Review. 

Ketchersid J, Scott J, Lew T, Banaei N, Kappagoda S. Case Rep Infect Dis. 2020 Aug 9;2020:8852115. doi: 10.1155/2020/8852115. eCollection 2020. PMID: 32850161 Free PMC article.

18.     Simple Processing of Formalin-Fixed Paraffin-Embedded Tissue for Accurate Testing with the Xpert MTB/RIF Assay. 

Budvytiene I, Banaei N. J Clin Microbiol. 2020 Feb 24;58(3):e01905-19. doi: 10.1128/JCM.01905-19. Print 2020 Feb 24. PMID: 31852763 Free PMC article. No abstract available.

1.          Immune monitoring using mass cytometry and related high-dimensional imaging approaches. 

Hartmann FJ, Bendall SC. Nat Rev Rheumatol. 2020 Feb;16(2):87-99. doi: 10.1038/s41584-019-0338-z. Epub 2019 Dec 31. PMID: 31892734 Review.

2.          MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure. 

Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, Marquez D, Angoshtari R, Greenwald NF, Fienberg H, Wang J, Kambham N, Kirkwood D, Nolan G, Montine TJ, Galli SJ, West R, Bendall SC, Angelo M. Sci Adv. 2019 Oct 9;5(10):eaax5851. doi: 10.1126/sciadv.aax5851. eCollection 2019 Oct. PMID: 31633026 Free PMC article.

3.          Multiplexed single-cell morphometry for hematopathology diagnostics. 

Tsai AG, Glass DR, Juntilla M, Hartmann FJ, Oak JS, Fernandez-Pol S, Ohgami RS, Bendall SC. Nat Med. 2020 Mar;26(3):408-417. doi: 10.1038/s41591-020-0783-x. Epub 2020 Mar 11. PMID: 32161403

4.          An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity. 

Glass DR, Tsai AG, Oliveria JP, Hartmann FJ, Kimmey SC, Calderon AA, Borges L, Glass MC, Wagar LE, Davis MM, Bendall SC. Immunity. 2020 Jul 14;53(1):217-232.e5. doi: 10.1016/j.immuni.2020.06.013. PMID: 32668225 Free PMC article.

5.          High-Parameter Immune Profiling with CyTOF. 

Sahaf B, Rahman A, Maecker HT, Bendall SC. Methods Mol Biol. 2020;2055:351-368. doi: 10.1007/978-1-4939-9773-2_16. PMID: 31502160

6.          Single-cell metabolic profiling of human cytotoxic T cells. 

Hartmann FJ, Mrdjen D, McCaffrey E, Glass DR, Greenwald NF, Bharadwaj A, Khair Z, Verberk SGS, Baranski A, Baskar R, Graf W, Van Valen D, Van den Bossche J, Angelo M, Bendall SC. Nat Biotechnol. 2020 Aug 31. doi: 10.1038/s41587-020-0651-8. Online ahead of print. PMID: 32868913

7.          TRAIL-induced variation of cell signaling states provides nonheritable resistance to apoptosis. 

Baskar R, Fienberg HG, Khair Z, Favaro P, Kimmey S, Green DR, Nolan GP, Plevritis S, Bendall SC. Life Sci Alliance. 2019 Nov 8;2(6):e201900554. doi: 10.26508/lsa.201900554. Print 2019 Dec. PMID: 31704709 Free PMC article.

8.          Diamonds in the doublets. 

Bendall SC. Nat Biotechnol. 2020 May;38(5):559-561. doi: 10.1038/s41587-020-0511-6. PMID: 32317762 No abstract available.

1.          Sensitivity optimisation of tuberculosis bioaerosol sampling. 

Patterson B, Dinkele R, Gessner S, Morrow C, Kamariza M, Bertozzi CR, Kamholz A, Bryden W, Call C, Warner DF, Wood R. PLoS One. 2020 Sep 3;15(9):e0238193. doi: 10.1371/journal.pone.0238193. eCollection 2020. PMID: 32881875 Free PMC article.

1.          A single-cell atlas of the peripheral immune response in patients with severe COVID-19. 

Wilk AJ, Rustagi A, Zhao NQ, Roque J, Martínez-Colón GJ, McKechnie JL, Ivison GT, Ranganath T, Vergara R, Hollis T, Simpson LJ, Grant P, Subramanian A, Rogers AJ, Blish CA. Nat Med. 2020 Jul;26(7):1070-1076. doi: 10.1038/s41591-020-0944-y. Epub 2020 Jun 8. PMID: 32514174 Free PMC article.

2.          Pregnancy-Induced Alterations in NK Cell Phenotype and Function. 

Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Front Immunol. 2019 Oct 23;10:2469. doi: 10.3389/fimmu.2019.02469. eCollection 2019. PMID: 31708922 Free PMC article.

3.          The Innate Immune System: Fighting on the Front Lines or Fanning the Flames of COVID-19? 

McKechnie JL, Blish CA. Cell Host Microbe. 2020 Jun 10;27(6):863-869. doi: 10.1016/j.chom.2020.05.009. Epub 2020 May 20. PMID: 32464098 Free PMC article. Review.

4.          Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis. 

Wilson JG, Simpson LJ, Ferreira AM, Rustagi A, Roque J, Asuni A, Ranganath T, Grant PM, Subramanian A, Rosenberg-Hasson Y, Maecker HT, Holmes SP, Levitt JE, Blish CA, Rogers AJ. JCI Insight. 2020 Sep 3;5(17):e140289. doi: 10.1172/jci.insight.140289. PMID: 32706339 Free PMC article.

5.          Symptomatic SARS-CoV-2 infections display specific IgG Fc structures. 

Chakraborty S, Edwards K, Buzzanco AS, Memoli MJ, Sherwood R, Mallajosyula V, Xie MM, Gonzalez J, Buffone C, Kathale N, Providenza S, Jagannathan P, Andrews JR, Blish CA, Krammer F, Dugan H, Wilson PC, Pham TD, Boyd SD, Zhang S, Taubenberger JK, Morales T, Schapiro JM, Parsonnet J, Wang TT.

medRxiv. 2020 May 18:2020.05.15.20103341. doi: 10.1101/2020.05.15.20103341. Preprint. PMID: 32511463 Free PMC article. Updated.

6.          Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Jean GH, Stevens BA, Lee JY, Rustagi A, Rogers AJ, Powell AE, Hunter M, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Nadeau KC, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, Blish CA, Boyd SD. Cell Host Microbe. 2020 Oct 7;28(4):516-525.e5. doi: 10.1016/j.chom.2020.09.002. Epub 2020 Sep 3. PMID: 32941787 Free PMC article.

7.          TIGIT is upregulated by HIV-1 infection and marks a highly functional adaptive and mature subset of natural killer cells. 

Vendrame E, Seiler C, Ranganath T, Zhao NQ, Vergara R, Alary M, Labbé AC, Guédou F, Poudrier J, Holmes S, Roger M, Blish CA. AIDS. 2020 May 1;34(6):801-813. doi: 10.1097/QAD.0000000000002488. PMID: 32028328

8.          B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Hoh RA, Jackson KJL, Roeltgen K, Lee JY, Rustagi A, Rogers AJ, Powell AE, Kim PS, Wang TT, Pinsky B, Blish CA, Boyd SD. Res Sq. 2020 May 6:rs.3.rs-27220. doi: 10.21203/rs.3.rs-27220/v1. Preprint. PMID: 32702737 Free PMC article. Updated.

9.          Enhancing natural killer cell function with gp41-targeting bispecific antibodies to combat HIV infection. 

Ramadoss NS, Zhao NQ, Richardson BA, Grant PM, Kim PS, Blish CA. AIDS. 2020 Jul 15;34(9):1313-1323. doi: 10.1097/QAD.0000000000002543. PMID: 32287071

10.     Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Stevens B, Lee JY, Rustagi A, Rogers AJ, Powell AE, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, BlishCA, Boyd SD. bioRxiv. 2020 Jul 9:2020.07.08.194456. doi: 10.1101/2020.07.08.194456. Preprint. PMID: 32676593 Free PMC article. Updated.

11.     Characterization of the Impact of Daclizumab Beta on Circulating Natural Killer Cells by Mass Cytometry. 

Ranganath T, Simpson LJ, Ferreira AM, Seiler C, Vendrame E, Zhao N, Fontenot JD, Holmes S, Blish CA. Front Immunol. 2020 Apr 24;11:714. doi: 10.3389/fimmu.2020.00714. eCollection 2020. PMID: 32391016 Free PMC article.

12.     Mass Cytometry Analysis of the NK Cell Receptor-Ligand Repertoire Reveals Unique Differences between Dengue-Infected Children and Adults. 

McKechnie JL, Beltrán D, Ferreira AM, Vergara R, Saenz L, Vergara O, Estripeaut D, Araúz AB, Simpson LJ, Holmes S, López-Vergès S, Blish CA. Immunohorizons. 2020 Oct 16;4(10):634-647. doi: 10.4049/immunohorizons.2000074. PMID: 33067399

13.     Treated HIV Infection Alters Phenotype but Not HIV-Specific Function of Peripheral Blood Natural Killer Cells. 

Zhao NQ, Ferreira AM, Grant PM, Holmes S, Blish CA. Front Immunol. 2020 May 12;11:829. doi: 10.3389/fimmu.2020.00829. eCollection 2020. PMID: 32477342 Free PMC article.

14.     Identification of the first cases of complete CD16A deficiency: Association with persistent EBV infection. 

Pérez-Portilla A, Moraru M, Blázquez-Moreno A, Kolb P, Bravo García-Morato M, Ranganath T, Esteso G, Gianelli C, Rodríguez-Pena R, Lozano-Rodríguez R, Torres-Canizales JM, Blish CA, Vales-Gomez M, Hengel H, Vilches C, López-Granados E, Reyburn HT. J Allergy Clin Immunol. 2020 Apr;145(4):1288-1292. doi: 10.1016/j.jaci.2019.11.049. Epub 2020 Jan 15. PMID: 31953104 No abstract available.

15.     Natural killer cell phenotype is altered in HIV-exposed seronegative women. 

Zhao NQ, Vendrame E, Ferreira AM, Seiler C, Ranganath T, Alary M, Labbé AC, Guédou F, Poudrier J, Holmes S, Roger M, Blish CA. PLoS One. 2020 Sep 1;15(9):e0238347. doi: 10.1371/journal.pone.0238347. eCollection 2020. PMID: 32870938 Free PMC article.

16.     Influenza-Induced Interferon Lambda Response Is Associated With Longer Time to Delivery Among Pregnant Kenyan Women. 

Seiler C, Bayless NL, Vergara R, Pintye J, Kinuthia J, Osborn L, Matemo D, Richardson BA, John-Stewart G, Holmes S, Blish CA. Front Immunol. 2020 Mar 17;11:452. doi: 10.3389/fimmu.2020.00452. eCollection 2020. PMID: 32256497 Free PMC article.

17.     Proinflammatory IgG Fc structures in patients with severe COVID-19. 

Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, Pham TD, Boyd SD, Nadeau KC, Pinsky BA, Zhang S, Memoli MJ, Taubenberger JK, Morales T, Schapiro JM, Tan GS, Jagannathan P, Wang TT. Nat Immunol. 2020 Nov 9. doi: 10.1038/s41590-020-00828-7. Online ahead of print. PMID: 33169014

1.          Symptomatic SARS-CoV-2 infections display specific IgG Fc structures. 

Chakraborty S, Edwards K, Buzzanco AS, Memoli MJ, Sherwood R, Mallajosyula V, Xie MM, Gonzalez J, Buffone C, Kathale N, Providenza S, Jagannathan P, Andrews JR, Blish CA, Krammer F, Dugan H, Wilson PC, Pham TD, Boyd SD, Zhang S, Taubenberger JK, Morales T, Schapiro JM, Parsonnet J, Wang TT. medRxiv. 2020 May 18:2020.05.15.20103341. doi: 10.1101/2020.05.15.20103341. Preprint. PMID: 32511463 Free PMC article. Updated.

2.          Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Jean GH, Stevens BA, Lee JY, Rustagi A, Rogers AJ, Powell AE, Hunter M, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Nadeau KC, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, Blish CA, Boyd SD. Cell Host Microbe. 2020 Oct 7;28(4):516-525.e5. doi: 10.1016/j.chom.2020.09.002. Epub 2020 Sep 3. PMID: 32941787 Free PMC article.

3.          VDJbase: an adaptive immune receptor genotype and haplotype database. 

Omer A, Shemesh O, Peres A, Polak P, Shepherd AJ, Watson CT, Boyd SD, Collins AM, Lees W, Yaari G. Nucleic Acids Res. 2020 Jan 8;48(D1):D1051-D1056. doi: 10.1093/nar/gkz872. PMID: 31602484 Free PMC article.

4.          Influenza vaccine-induced human bone marrow plasma cells decline within a year after vaccination. 

Davis CW, Jackson KJL, McCausland MM, Darce J, Chang C, Linderman SL, Chennareddy C, Gerkin R, Brown SJ, Wrammert J, Mehta AK, Cheung WC, Boyd SD, Waller EK, Ahmed R. Science. 2020 Oct 9;370(6513):237-241. doi: 10.1126/science.aaz8432. Epub 2020 Aug 13. PMID: 32792465

5.          B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Hoh RA, Jackson KJL, Roeltgen K, Lee JY, Rustagi A, Rogers AJ, Powell AE, Kim PS, Wang TT, Pinsky B, Blish CA, Boyd SD. Res Sq. 2020 May 6:rs.3.rs-27220. doi: 10.21203/rs.3.rs-27220/v1. Preprint. PMID: 32702737 Free PMC article. Updated.

6.          Adjuvanted H5N1 influenza vaccine enhances both cross-reactive memory B cell and strain-specific naive B cell responses in humans. 

Ellebedy AH, Nachbagauer R, Jackson KJL, Dai YN, Han J, Alsoussi WB, Davis CW, Stadlbauer D, Rouphael N, Chromikova V, McCausland M, Chang CY, Cortese M, Bower M, Chennareddy C, Schmitz AJ, Zarnitsyna VI, Lai L, Rajabhathor A, Kazemian C, Antia R, Mulligan MJ, Ward AB, Fremont DH, Boyd SD, Pulendran B, Krammer F, Ahmed R. Proc Natl Acad Sci U S A. 2020 Jul 28;117(30):17957-17964. doi: 10.1073/pnas.1906613117. Epub 2020 Jul 13. PMID: 32661157

7.          Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Stevens B, Lee JY, Rustagi A, Rogers AJ, Powell AE, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, Blish CA, Boyd SD. bioRxiv. 2020 Jul 9:2020.07.08.194456. doi: 10.1101/2020.07.08.194456. Preprint. PMID: 32676593 Free PMC article. Updated.

8.          Aberrant B cell repertoire selection associated with HIV neutralizing antibody breadth. 

Roskin KM, Jackson KJL, Lee JY, Hoh RA, Joshi SA, Hwang KK, Bonsignori M, Pedroza-Pacheco I, Liao HX, Moody MA, Fire AZ, Borrow P, Haynes BF, Boyd SD. Nat Immunol. 2020 Feb;21(2):199-209. doi: 10.1038/s41590-019-0581-0. Epub 2020 Jan 20. PMID: 31959979 Free PMC article.

9.          SARS-CoV-2 RNAemia in a Healthy Blood Donor 40 Days After Respiratory Illness Resolution. 

Pham TD, Huang C, Wirz OF, Röltgen K, Sahoo MK, Layon A, Pandey S, Foung SK, Boyd SD, Pinsky BA. Ann Intern Med. 2020 Jul 17:L20-0725. doi: 10.7326/L20-0725. Online ahead of print. PMID: 32678685 Free PMC article. No abstract available.

10.     Proinflammatory IgG Fc structures in patients with severe COVID-19. 

Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, Pham TD, Boyd SD, Nadeau KC, Pinsky BA, Zhang S, Memoli MJ, Taubenberger JK, Morales T, Schapiro JM, Tan GS, Jagannathan P, Wang TT. Nat Immunol. 2020 Nov 9. doi: 10.1038/s41590-020-00828-7. Online ahead of print. PMID: 33169014

1.          Retinoic Acid and Lymphotoxin Signaling Promote Differentiation of Human Intestinal M Cells. 

Ding S, Song Y, Brulois KF, Pan J, Co JY, Ren L, Feng N, Yasukawa LL, Sánchez-Tacuba L, Wosen JE, Mellins ED, Monack DM, Amieva MR, Kuo CJ, Butcher EC, Greenberg HB. Gastroenterology. 2020 Jul;159(1):214-226.e1. doi: 10.1053/j.gastro.2020.03.053. Epub 2020 Apr 1. PMID: 32247021

2.          Endothelial HIF-2α as a Key Endogenous Mediator Preventing Emphysema. 

Pasupneti S, Tian W, Tu AB, Dahms P, Granucci E, Gandjeva A, Xiang M, Butcher EC, Semenza GL, Tuder RM, Jiang X, Nicolls MR. Am J Respir Crit Care Med. 2020 Oct 1;202(7):983-995. doi: 10.1164/rccm.202001-0078OC. PMID: 32515984

3.          Neutrophils Recirculate through Lymph Nodes to Survey Tissues for Pathogens. 

Bogoslowski A, Wijeyesinghe S, Lee WY, Chen CS, Alanani S, Jenne C, Steeber DA, Scheiermann C, Butcher EC, Masopust D, Kubes P. J Immunol. 2020 May 1;204(9):2552-2561. doi: 10.4049/jimmunol.2000022. Epub 2020 Mar 23. PMID: 32205425

4.          A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature. 

Xiang M, Grosso RA, Takeda A, Pan J, Bekkhus T, Brulois K, Dermadi D, Nordling S, Vanlandewijck M, Jalkanen S, Ulvmar MH, Butcher EC. Front Cardiovasc Med. 2020 Apr 30;7:52. doi: 10.3389/fcvm.2020.00052. eCollection 2020. PMID: 32426372 Free PMC article.

5.          A molecular map of murine lymph node blood vascular endothelium at single cell resolution. 

Brulois K, Rajaraman A, Szade A, Nordling S, Bogoslowski A, Dermadi D, Rahman M, Kiefel H, O'Hara E, Koning JJ, Kawashima H, Zhou B, Vestweber D, Red-Horse K, Mebius RE, Adams RH, Kubes P, Pan J, Butcher EC. Nat Commun. 2020 Jul 30;11(1):3798. doi: 10.1038/s41467-020-17291-5. PMID: 32732867 Free PMC article.

6.          Exploration of Cell Development Pathways through High-Dimensional Single Cell Analysis in Trajectory Space. 

Dermadi D, Bscheider M, Bjegovic K, Lazarus NH, Szade A, Hadeiba H, Butcher EC. iScience. 2020 Feb 21;23(2):100842. doi: 10.1016/j.isci.2020.100842. Epub 2020 Jan 16. PMID: 32058956 Free PMC article.

1.          Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution. 

Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W. Nat Commun. 2019 Dec 3;10(1):5511. doi: 10.1038/s41467-019-13494-7. PMID: 31796736 Free PMC article.

2.          Macromolecular modeling and design in Rosetta: recent methods and frameworks. 

Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, KleffnerR, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R. Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1. PMID: 32483333 Review.

3.          RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look. 

Rangan R, Zheludev IN, Hagey RJ, Pham EA, Wayment-Steele HK, Glenn JS, Das R. RNA. 2020 Aug;26(8):937-959. doi: 10.1261/rna.076141.120. Epub 2020 May 12. PMID: 32398273 Free PMC article.

4.          Transcription polymerase-catalyzed emergence of novel RNA replicons. 

Jain N, Blauch LR, Szymanski MR, Das R, Tang SKY, Yin YW, Fire AZ. Science. 2020 Apr 10;368(6487):eaay0688. doi: 10.1126/science.aay0688. Epub 2020 Mar 26. PMID: 32217750 Free PMC article.

5.          Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures. 

Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R. Nat Methods. 2020 Jul;17(7):699-707. doi: 10.1038/s41592-020-0878-9. Epub 2020 Jul 2. PMID: 32616928

6.          RNA 3D structure prediction guided by independent folding of homologous sequences. 

Magnus M, Kappel K, Das R, Bujnicki JM. BMC Bioinformatics. 2019 Oct 22;20(1):512. doi: 10.1186/s12859-019-3120-y. PMID: 31640563 Free PMC article.

7.          RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses. 

Rangan R, Zheludev IN, Das R. bioRxiv. 2020 Apr 6:2020.03.27.012906. doi: 10.1101/2020.03.27.012906. Preprint. PMID: 32511306 Free PMC article. Updated.

8.          RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. 

Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piątkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Żyła A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof E. RNA. 2020 Aug;26(8):982-995. doi: 10.1261/rna.075341.120. Epub 2020 May 5. PMID: 32371455 Free PMC article.

9.          Anomalous Reverse Transcription through Chemical Modifications in Polyadenosine Stretches. 

Kladwang W, Topkar VV, Liu B, Rangan R, Hodges TL, Keane SC, Al-Hashimi H, Das R. Biochemistry. 2020 Jun 16;59(23):2154-2170. doi: 10.1021/acs.biochem.0c00020. Epub 2020 Jun 1. PMID: 32407625

10.     FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds. 

Watkins AM, Rangan R, Das R. Structure. 2020 Aug 4;28(8):963-976.e6. doi: 10.1016/j.str.2020.05.011. Epub 2020 Jun 11. PMID: 32531203

11.     Folding heterogeneity in the essential human telomerase RNA three-way junction. 

Palka C, Forino N, Hentschel J, Das R, Stone MD. RNA. 2020 Aug 19:rna.077255.120. doi:10.1261/rna.077255.120. Online ahead of print. PMID: 32817241

1.          Predicting HLA class II antigen presentation through integrated deep learning. 

Chen B, Khodadoust MS, Olsson N, Wagar LE, Fast E, Liu CL, Muftuoglu Y, Sworder BJ, Diehn M, Levy R, DavisMM, Elias JE, Altman RB, Alizadeh AA. Nat Biotechnol. 2019 Nov;37(11):1332-1343. doi: 10.1038/s41587-019-0280-2. Epub 2019 Oct 14. PMID: 31611695 Free PMC article.

2.          The science and medicine of human immunology. 

Pulendran B, Davis MM. Science. 2020 Sep 25;369(6511):eaay4014. doi: 10.1126/science.aay4014. PMID: 32973003 Review.

3.          Pregnancy-Induced Alterations in NK Cell Phenotype and Function. 

Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Front Immunol. 2019 Oct 23;10:2469. doi: 10.3389/fimmu.2019.02469. eCollection 2019. PMID: 31708922 Free PMC article.

4.          The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system. 

Tomic A, Tomic I, Dekker CL, Maecker HT, Davis MM. Sci Data. 2019 Oct 21;6(1):214. doi: 10.1038/s41597-019-0213-4. PMID: 31636302 Free PMC article.

5.          In vivo clonal expansion and phenotypes of hypocretin-specific CD4⁺ T cells in narcolepsy patients and controls. 

Jiang W, Birtley JR, Hung SC, Wang W, Chiou SH, Macaubas C, Kornum B, Tian L, Huang H, Adler L, Weaver G, Lu L, Ilstad-Minnihan A, Somasundaram S, Ayyangar S, Davis MM, Stern LJ, Mellins ED. Nat Commun. 2019 Nov 20;10(1):5247. doi: 10.1038/s41467-019-13234-x. PMID: 31748512 Free PMC article.

6.          An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity. 

Glass DR, Tsai AG, Oliveria JP, Hartmann FJ, Kimmey SC, Calderon AA, Borges L, Glass MC, Wagar LE, Davis MM, Bendall SC. Immunity. 2020 Jul 14;53(1):217-232.e5. doi: 10.1016/j.immuni.2020.06.013. PMID: 32668225 Free PMC article.

7.          Analyzing the Mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening. 

Huang H, Wang C, Rubelt F, Scriba TJ, Davis MM. Nat Biotechnol. 2020 Oct;38(10):1194-1202. doi: 10.1038/s41587-020-0505-4. Epub 2020 Apr 27. PMID: 32341563 Free PMC article.

8.          Upregulation of CD47 Is a Host Checkpoint Response to Pathogen Recognition. 

Tal MC, Torrez Dulgeroff LB, Myers L, Cham LB, Mayer-Barber KD, Bohrer AC, Castro E, Yiu YY, Lopez Angel C, Pham E, Carmody AB, Messer RJ, Gars E, Kortmann J, Markovic M, Hasenkrug M, Peterson KE, Winkler CW, Woods TA, Hansen P, Galloway S, Wagh D, Fram BJ, Nguyen T, Corey D, Kalluru RS, Banaei N, Rajadas J, Monack DM, Ahmed A, Sahoo D, Davis MM, Glenn JS, Adomati T, Lang KS, Weissman IL, Hasenkrug KJ. mBio. 2020 Jun 23;11(3):e01293-20. doi: 10.1128/mBio.01293-20. PMID: 32576678 Free PMC article.

9.          Systems immunology. 

Davis MM. Curr Opin Immunol. 2020 Jul 29;65:79-82. doi: 10.1016/j.coi.2020.06.006. Online ahead of print. PMID: 32738786 Free PMC article. Review.

10.     T cell analysis in vaccination. 

Davis MM. Curr Opin Immunol. 2020 Jun 27;65:70-73. doi: 10.1016/j.coi.2020.05.002. Online ahead of print. PMID: 32604000 Review.

11.     Injectable Hydrogels for Sustained Codelivery of Subunit Vaccines Enhance Humoral Immunity. 

Roth GA, Gale EC, Alcántara-Hernández M, Luo W, Axpe E, Verma R, Yin Q, Yu AC, Lopez Hernandez H, Maikawa CL, Smith AAA, Davis MM, Pulendran B, Idoyaga J, Appel EA. ACS Cent Sci. 2020 Oct 28;6(10):1800-1812. doi: 10.1021/acscentsci.0c00732. Epub 2020 Sep 16. PMID: 33145416 Free PMC article.

12.     Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19. 

Su Y, Chen D, Yuan D, Lausted C, Choi J, Dai CL, Voillet V, Duvvuri VR, Scherler K, Troisch P, Baloni P, Qin G, Smith B, Kornilov SA, Rostomily C, Xu A, Li J, Dong S, Rothchild A, Zhou J, Murray K, Edmark R, Hong S, Heath JE, Earls J, Zhang R, Xie J, Li S, Roper R, Jones L, Zhou Y, Rowen L, Liu R, Mackay S, O'Mahony DS, Dale CR, Wallick JA, Algren HA, Zager MA; ISB-Swedish COVID19 Biobanking Unit, Wei W, Price ND, Huang S, Subramanian N, Wang K, Magis AT, Hadlock JJ, Hood L, Aderem A, Bluestone JA, Lanier LL, Greenberg PD, Gottardo R, Davis MM, Goldman JD, Heath JR. Cell. 2020 Oct 28:S0092-8674(20)31444-6. doi: 10.1016/j.cell.2020.10.037. Online ahead of print. PMID: 33171100 Free PMC article.

1.          Consensus summary report for CEPI/BC March 12-13, 2020 meeting: Assessment of risk of disease enhancement with COVID-19 vaccines. 

Lambert PH, Ambrosino DM, Andersen SR, Baric RS, Black SB, Chen RT, Dekker CL, Didierlaurent AM, Graham BS, Martin SD, Molrine DC, Perlman S, Picard-Fraser PA, Pollard AJ, Qin C, Subbarao K, Cramer JP. Vaccine. 2020 Jun 26;38(31):4783-4791. doi: 10.1016/j.vaccine.2020.05.064. Epub 2020 May 25. PMID: 32507409 Free PMC article.

2.          Pregnancy-Induced Alterations in NK Cell Phenotype and Function. 

Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Front Immunol. 2019 Oct 23;10:2469. doi: 10.3389/fimmu.2019.02469. eCollection 2019. PMID: 31708922 Free PMC article.

3.          The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system. 

Tomic A, Tomic I, Dekker CL, Maecker HT, Davis MM. Sci Data. 2019 Oct 21;6(1):214. doi: 10.1038/s41597-019-0213-4. PMID: 31636302 Free PMC article.

4.          Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics. 

Horns F, Dekker CL, Quake SR. Cell Rep. 2020 Jan 21;30(3):905-913.e6. doi: 10.1016/j.celrep.2019.12.063. PMID: 31968262

1.          Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning. 

Ho CS, Jean N, Hogan CA, Blackmon L, Jeffrey SS, Holodniy M, Banaei N, Saleh AAE, Ermon S, Dionne J. Nat Commun. 2019 Oct 30;10(1):4927. doi: 10.1038/s41467-019-12898-9. PMID: 31666527 Free PMC article.

2.          Toward rapid infectious disease diagnosis with advances in surface-enhanced Raman spectroscopy. 

Tadesse LF, Safir F, Ho CS, Hasbach X, Khuri-Yakub BP, Jeffrey SS, Saleh AAE, Dionne J. J Chem Phys. 2020 Jun 28;152(24):240902. doi: 10.1063/1.5142767. PMID: 32610995

3.          Plasmonic and Electrostatic Interactions Enable Uniformly Enhanced Liquid Bacterial Surface-Enhanced Raman Scattering (SERS). 

Tadesse LF, Ho CS, Chen DH, Arami H, Banaei N, Gambhir SS, Jeffrey SS, Saleh AAE, Dionne J. Nano Lett. 2020 Oct 14;20(10):7655-7661. doi: 10.1021/acs.nanolett.0c03189. Epub 2020 Oct 4. PMID: 32914987 Free PMC article.

1.          Predicting HLA class II antigen presentation through integrated deep learning. 

Chen B, Khodadoust MS, Olsson N, Wagar LE, Fast E, Liu CL, Muftuoglu Y, Sworder BJ, Diehn M, Levy R, Davis MM, Elias JE, Altman RB, Alizadeh AA. Nat Biotechnol. 2019 Nov;37(11):1332-1343. doi: 10.1038/s41587-019-0280-2. Epub 2019 Oct 14. PMID: 31611695 Free PMC article.

1.          Trans-endocytosis of intact IL-15Rα-IL-15 complex from presenting cells into NK cells favors signaling for proliferation. 

Anton OM, Peterson ME, Hollander MJ, Dorward DW, Arora G, Traba J, Rajagopalan S, Snapp EL, Garcia KC, Waldmann TA, Long EO. Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):522-531. doi: 10.1073/pnas.1911678117. Epub 2019 Dec 23. PMID: 31871169 Free PMC article.

2.          A Human IgSF Cell-Surface Interactome Reveals a Complex Network of Protein-Protein Interactions. 

Wojtowicz WM, Vielmetter J, Fernandes RA, Siepe DH, Eastman CL, Chisholm GB, Cox S, Klock H, Anderson PW, Rue SM, Miller JJ, Glaser SM, Bragstad ML, Vance J, Lam AW, Lesley SA, Zinn K, Garcia KC. Cell. 2020 Aug 20;182(4):1027-1043.e17. doi: 10.1016/j.cell.2020.07.025. PMID: 32822567 Free PMC article.

3.          Wnt Activation and Reduced Cell-Cell Contact Synergistically Induce Massive Expansion of Functional Human iPSC-Derived Cardiomyocytes. 

Buikema JW, Lee S, Goodyer WR, Maas RG, Chirikian O, Li G, Miao Y, Paige SL, Lee D, Wu H, Paik DT, Rhee S, Tian L, Galdos FX, Puluca N, Beyersdorf B, Hu J, Beck A, Venkamatran S, Swami S, Wijnker P, Schuldt M, Dorsch LM, van Mil A, Red-Horse K, Wu JY, Geisen C, Hesse M, Serpooshan V, Jovinge S, Fleischmann BK, Doevendans PA, van der Velden J, Garcia KC, Wu JC, Sluijter JPG, Wu SM. Cell Stem Cell. 2020 Jul 2;27(1):50-63.e5. doi: 10.1016/j.stem.2020.06.001. PMID: 32619518

4.          Next-Generation Surrogate Wnts Support Organoid Growth and Deconvolute Frizzled Pleiotropy In Vivo. 

Miao Y, Ha A, de Lau W, Yuki K, Santos AJM, You C, Geurts MH, Puschhof J, Pleguezuelos-Manzano C, Peng WC, Senlice R, Piani C, Buikema JW, Gbenedio OM, Vallon M, Yuan J, de Haan S, Hemrika W, Rösch K, Dang LT, Baker D, Ott M, Depeille P, Wu SM, Drost J, Nusse R, Roose JP, Piehler J, Boj SF, Janda CY, Clevers H, Kuo CJ, Garcia KC. Cell Stem Cell. 2020 Nov 5;27(5):840-851.e6. doi: 10.1016/j.stem.2020.07.020. Epub 2020 Aug 19. PMID: 32818433

5.          Immune receptor inhibition through enforced phosphatase recruitment. 

Fernandes RA, Su L, Nishiga Y, Ren J, Bhuiyan AM, Cheng N, Kuo CJ, Picton LK, Ohtsuki S, Majzner RG, Rietberg SP, Mackall CL, Yin Q, Ali LR, Yang X, Savvides CS, Sage J, Dougan M, Garcia KC. Nature. 2020 Oct;586(7831):779-784. doi: 10.1038/s41586-020-2851-2. Epub 2020 Oct 21. PMID: 33087934

6.          Surrogate R-spondins for tissue-specific potentiation of Wnt Signaling. 

Luca VC, Miao Y, Li X, Hollander MJ, Kuo CJ, Garcia KC. PLoS One. 2020 Jan 8;15(1):e0226928. doi: 10.1371/journal.pone.0226928. eCollection 2020. PMID: 31914456 Free PMC article.

7.          Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations. 

Wilmes S, Hafer M, Vuorio J, Tucker JA, Winkelmann H, Löchte S, Stanly TA, Pulgar Prieto KD, Poojari C, Sharma V, Richter CP, Kurre R, Hubbard SR, Garcia KC, Moraga I, Vattulainen I, Hitchcock IS, Piehler J. Science. 2020 Feb 7;367(6478):643-652. doi: 10.1126/science.aaw3242. PMID: 32029621

8.          Interleukin-2 druggability is modulated by global conformational transitions controlled by a helical capping switch. 

De Paula VS, Jude KM, Nerli S, Glassman CR, Garcia KC, Sgourakis NG. Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7183-7192. doi: 10.1073/pnas.2000419117. Epub 2020 Mar 17. PMID: 32184322 Free PMC article.

1.          Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). 

Cossarizza A, et al. Eur J Immunol. 2019 Oct;49(10):1457-1973. doi: 10.1002/eji.201970107. PMID: 31633216 Free PMC article.

2.          CytoNorm: A Normalization Algorithm for Cytometry Data. 

Van Gassen S, Gaudilliere B, Angst MS, Saeys Y, Aghaeepour N. Cytometry A. 2020 Mar;97(3):268-278. doi: 10.1002/cyto.a.23904. Epub 2019 Oct 21. PMID: 31633883 Free PMC article.

3.          Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities. 

Davis KD, Aghaeepour N, Ahn AH, Angst MS, Borsook D, Brenton A, Burczynski ME, Crean C, Edwards R, Gaudilliere B, Hergenroeder GW, Iadarola MJ, Iyengar S, Jiang Y, Kong JT, Mackey S, Saab CY, Sang CN, Scholz J, Segerdahl M, Tracey I, Veasley C, Wang J, Wager TD, Wasan AD, Pelleymounter MA. Nat Rev Neurol. 2020 Jul;16(7):381-400. doi: 10.1038/s41582-020-0362-2. Epub 2020 Jun 15. PMID: 32541893 Free PMC article. Review.

4.          Multiomic immune clockworks of pregnancy. 

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. PMID: 32020337 Free PMC article. Review.

5.          Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops. 

Czechowska K, Lannigan J, Aghaeepour N, Back JB, Begum J, Behbehani G, Bispo C, Bitoun D, Fernández AB, Boova ST, Brinkman RR, Ciccolella CO, Cotleur B, Davies D, Dela Cruz GV, Del Rio-Guerra R, Des Lauriers-Cox AM, Douagi I, Dumrese C, Bonilla Escobar DL, Estevam J, Ewald C, Fossum A, Gaudillière B, Green C, Groves C, Hall C, Haque Y, Hedrick MN, Hogg K, Hsieh EWY, Irish J, Lederer J, Leipold M, Lewis-Tuffin LJ, Litwin V, Lopez P, Nasdala I, Nedbal J, Ohlsson-Wilhelm BM, Price KM, Rahman AH, Rayanki R, Rieger AM, Robinson JP, Shapiro H, Sun YS, Tang VA, Tesfa L, Telford WG, Walker R, Welsh JA, Wheeler P, Tárnok A. Cytometry A. 2019 Dec;95(12):1236-1274. doi: 10.1002/cyto.a.23941. PMID: 31833655 No abstract available.

6.          Changes in pregnancy-related serum biomarkers early in gestation are associated with later development of preeclampsia. 

Hao S, You J, Chen L, Zhao H, Huang Y, Zheng L, Tian L, Maric I, Liu X, Li T, Bianco YK, Winn VD, Aghaeepour N, Gaudilliere B, Angst MS, Zhou X, Li YM, Mo L, Wong RJ, Shaw GM, Stevenson DK, Cohen HJ, Mcelhinney DB, Sylvester KG, Ling XB. PLoS One. 2020 Mar 3;15(3):e0230000. doi: 10.1371/journal.pone.0230000. eCollection 2020. PMID: 32126118 Free PMC article.

7.          Systematic Immunophenotyping Reveals Sex-Specific Responses After Painful Injury in Mice. 

Tawfik VL, Huck NA, Baca QJ, Ganio EA, Haight ES, Culos A, Ghaemi S, Phongpreecha T, Angst MS, Clark JD, Aghaeepour N, Gaudilliere B. Front Immunol. 2020 Jul 29;11:1652. doi: 10.3389/fimmu.2020.01652. eCollection 2020. PMID: 32849569 Free PMC article.

8.          Landscape of coordinated immune responses to H1N1 challenge in humans. 

Rahil Z, Leylek R, Schürch CM, Chen H, Bjornson-Hooper Z, Christensen SR, Gherardini PF, Bhate SS, Spitzer MH, Fragiadakis GK, Mukherjee N, Kim N, Jiang S, Yo J, Gaudilliere B, Affrime M, Bock B, Hensley SE, Idoyaga J, Aghaeepour N, Kim K, Nolan GP, McIlwain DR. J Clin Invest. 2020 Nov 2;130(11):5800-5816. doi: 10.1172/JCI137265. PMID: 33044226

9.          Towards personalized medicine in maternal and child health: integrating biologic and social determinants. 

Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, Mayo JA, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Sirota M, Snyder MP, Sylvester KG, Hao S, Wise PH, Shaw GM, Katz M. Pediatr Res. 2020 May 26. doi: 10.1038/s41390-020-0981-8. Online ahead of print. PMID: 32454518 No abstract available.

10.     VoPo leverages cellular heterogeneity for predictive modeling of single-cell data. 

Stanley N, Stelzer IA, Tsai AS, Fallahzadeh R, Ganio E, Becker M, Phongpreecha T, Nassar H, Ghaemi S, Maric I, Culos A, Chang AL, Xenochristou M, Han X, Espinosa C, Rumer K, Peterson L, Verdonk F, Gaudilliere D, Tsai E, Feyaerts D, Einhaus J, Ando K, Wong RJ, Obermoser G, Shaw GM, Stevenson DK, Angst MS, Gaudilliere B, Aghaeepour N. Nat Commun. 2020 Jul 27;11(1):3738. doi: 10.1038/s41467-020-17569-8. PMID: 32719375 Free PMC article.

1.          Group B Streptococcus maternal colonization and respiratory infections in the offspring: lessons learned from an analysis of a population-based cohort with 18-year follow-up. 

Greenbaum S, Sheiner E, Wainstock T, Segal I, Sergienko R, Walfisch A. Arch Gynecol Obstet. 2020 Jan;301(1):101-106. doi: 10.1007/s00404-019-05397-1. Epub 2019 Nov 29. PMID: 31784813

2.          Evolution of Immune Sexual Dimorphism in Response to Placental Invasiveness: A Response to Natri et al. 

Greenbaum S, Greenbaum G. Trends Genet. 2020 Jan;36(1):3-5. doi: 10.1016/j.tig.2019.10.009. Epub 2019 Nov 18. PMID: 31753530 No abstract available.

1.          Pregnancy-Induced Alterations in NK Cell Phenotype and Function. 

Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Front Immunol. 2019 Oct 23;10:2469. doi: 10.3389/fimmu.2019.02469. eCollection 2019. PMID: 31708922 Free PMC article.

2.          Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. 

Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B. Science. 2020 Sep 4;369(6508):1210-1220. doi: 10.1126/science.abc6261. Epub 2020 Aug 11. PMID: 32788292

3.          Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. 

Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. Cell Rep. 2019 Nov 12;29(7):1961-1973.e4. doi: 10.1016/j.celrep.2019.10.019. PMID: 31722210 Free PMC article.

4.          Integrated, multicohort analysis reveals unified signature of systemic lupus erythematosus. 

Haynes WA, Haddon DJ, Diep VK, Khatri A, Bongen E, Yiu G, Balboni I, Bolen CR, Mao R, Utz PJ, Khatri P. JCI Insight. 2020 Feb 27;5(4):e122312. doi: 10.1172/jci.insight.122312. PMID: 31971918 Free PMC article.

5.          T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers. 

Arunachalam PS, Charles TP, Joag V, Bollimpelli VS, Scott MKD, Wimmers F, Burton SL, Labranche CC, Petitdemange C, Gangadhara S, Styles TM, Quarnstrom CF, Walter KA, Ketas TJ, Legere T, Jagadeesh Reddy PB, Kasturi SP, Tsai A, Yeung BZ, Gupta S, Tomai M, Vasilakos J, Shaw GM, Kang CY, Moore JP, Subramaniam S, Khatri P, Montefiori D, Kozlowski PA, Derdeyn CA, Hunter E, Masopust D, Amara RR, Pulendran B. Nat Med. 2020 Jun;26(6):932-940. doi: 10.1038/s41591-020-0858-8. Epub 2020 May 11. PMID: 32393800 Free PMC article.

6.          Cellular senescence impairs the reversibility of pulmonary arterial hypertension. 

van der Feen DE, Bossers GPL, Hagdorn QAJ, Moonen JR, Kurakula K, Szulcek R, Chappell J, Vallania F, Donato M, Kok K, Kohli JS, Petersen AH, van Leusden T, Demaria M, Goumans MTH, De Boer RA, Khatri P, Rabinovitch M, Berger RMF, Bartelds B. Sci Transl Med. 2020 Jul 29;12(554):eaaw4974. doi: 10.1126/scitranslmed.aaw4974. PMID: 32727916

7.          Pilot study of a novel serum mRNA gene panel for diagnosis of acute septic arthritis. 

Schultz BJ, Sweeney T, DeBaun MR, Remmel M, Midic U, Khatri P, Gardner MJ. World J Orthop. 2019 Dec 18;10(12):424-433. doi: 10.5312/wjo.v10.i12.424. eCollection 2019 Dec 18. PMID: 31908991 Free PMC article.

8.          A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections. 

Mayhew MB, Buturovic L, Luethy R, Midic U, Moore AR, Roque JA, Shaller BD, Asuni T, Rawling D, Remmel M, Choi K, Wacker J, Khatri P, Rogers AJ, Sweeney TE. Nat Commun. 2020 Mar 4;11(1):1177. doi: 10.1038/s41467-020-14975-w. PMID: 32132525 Free PMC article.

9.          National Institutes of Health StrokeNet During the Time of COVID-19 and Beyond. 

Broderick JP, Elm JJ, Janis LS, Zhao W, Moy CS, Dillon CR, Chimowitz MI, Sacco RL, Cramer SC, Wolf SL, Johnston KC, Saver JL, Marshall RS, Brown D, Wintermark M, Elkind MSV, Kamel H, Tirschwell DL, Longstreth WT, Chervin RD, Adeoye OM, Barreto AD, Grotta JC, Ramey SL, Lo WD, Feng W, Schlaug G, Sheth KN, Selim M, Naidech AM, Lansberg MG, Lazar RM, Albers GW, Griffin JS, Sirline LP, Frasure J, Wright CB, Khatri P; NIH StrokeNet Investigators. Stroke. 2020 Aug;51(8):2580-2586. doi: 10.1161/STROKEAHA.120.030417. Epub 2020 Jun 24. PMID: 32716819 Free PMC article. No abstract available.

10.     Data Heterogeneity: The Enzyme to Catalyze Translational Bioinformatics? 

Cahan EM, Khatri P. J Med Internet Res. 2020 Aug 12;22(8):e18044. doi: 10.2196/18044. PMID: 32784182 Free PMC article.

1.          High-Efficiency, Selection-free Gene Repair in Airway Stem Cells from Cystic Fibrosis Patients Rescues CFTR Function in Differentiated Epithelia. 

Vaidyanathan S, Salahudeen AA, Sellers ZM, Bravo DT, Choi SS, Batish A, Le W, Baik R, de la O S, Kaushik MP, Galper N, Lee CM, Teran CA, Yoo JH, Bao G, Chang EH, Patel ZM, Hwang PH, Wine JJ, Milla CE, Desai TJ, Nayak JV, Kuo CJ, Porteus MH. Cell Stem Cell. 2020 Feb 6;26(2):161-171.e4. doi: 10.1016/j.stem.2019.11.002. Epub 2019 Dec 12. PMID: 31839569

2.          CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities. 

Han K, Pierce SE, Li A, Spees K, Anderson GR, Seoane JA, Lo YH, Dubreuil M, Olivas M, Kamber RA, Wainberg M, Kostyrko K, Kelly MR, Yousefi M, Simpkins SW, Yao D, Lee K, Kuo CJ, Jackson PK, Sweet-Cordero A, Kundaje A, Gentles AJ, Curtis C, Winslow MM, Bassik MC. Nature. 2020 Apr;580(7801):136-141. doi: 10.1038/s41586-020-2099-x. Epub 2020 Mar 11. PMID: 32238925 Free PMC article.

3.          Organoid Models of Tumor Immunology. 

Yuki K, Cheng N, Nakano M, Kuo CJ. Trends Immunol. 2020 Aug;41(8):652-664. doi: 10.1016/j.it.2020.06.010. Epub 2020 Jul 9. PMID: 32654925 Free PMC article. Review.

4.           Next-Generation Surrogate Wnts Support Organoid Growth and Deconvolute Frizzled Pleiotropy In Vivo. 

Miao Y, Ha A, de Lau W, Yuki K, Santos AJM, You C, Geurts MH, Puschhof J, Pleguezuelos-Manzano C, Peng WC, Senlice R, Piani C, Buikema JW, Gbenedio OM, Vallon M, Yuan J, de Haan S, Hemrika W, Rösch K, Dang LT, Baker D, Ott M, Depeille P, Wu SM, Drost J, Nusse R, Roose JP, Piehler J, Boj SF, Janda CY, Clevers H, Kuo CJ, Garcia KC. Cell Stem Cell. 2020 Nov 5;27(5):840-851.e6. doi: 10.1016/j.stem.2020.07.020. Epub 2020 Aug 19. PMID: 32818433

5.          Retinoic Acid and Lymphotoxin Signaling Promote Differentiation of Human Intestinal M Cells. 

Ding S, Song Y, Brulois KF, Pan J, Co JY, Ren L, Feng N, Yasukawa LL, Sánchez-Tacuba L, Wosen JE, Mellins ED, Monack DM, Amieva MR, Kuo CJ, Butcher EC, Greenberg HB. Gastroenterology. 2020 Jul;159(1):214-226.e1. doi: 10.1053/j.gastro.2020.03.053. Epub 2020 Apr 1. PMID: 32247021

6.          Immune receptor inhibition through enforced phosphatase recruitment. 

Fernandes RA, Su L, Nishiga Y, Ren J, Bhuiyan AM, Cheng N, Kuo CJ, Picton LK, Ohtsuki S, Majzner RG, Rietberg SP, Mackall CL, Yin Q, Ali LR, Yang X, Savvides CS, Sage J, Dougan M, Garcia KC. Nature. 2020 Oct;586(7831):779-784. doi: 10.1038/s41586-020-2851-2. Epub 2020 Oct 21. PMID: 33087934

7.          Surrogate R-spondins for tissue-specific potentiation of Wnt Signaling. 

Luca VC, Miao Y, Li X, Hollander MJ, Kuo CJ, Garcia KC. PLoS One. 2020 Jan 8;15(1):e0226928. doi: 10.1371/journal.pone.0226928. eCollection 2020. PMID: 31914456 Free PMC article.

8.          Organoids as Oracles for Precision Medicine in Rectal Cancer. 

Kolahi KS, Nakano M, Kuo CJ. Cell Stem Cell. 2020 Jan 2;26(1):4-6. doi: 10.1016/j.stem.2019.12.003. PMID: 31951587

9.          Integrated genomic characterization of ERBB2/HER2 alterations in invasive breast carcinoma: a focus on unusual FISH groups. 

Yang SR, Bouhlal Y, De La Vega FM, Ballard M, Kuo CJ, Vilborg A, Jensen G, Allison K. Mod Pathol. 2020 Aug;33(8):1546-1556. doi: 10.1038/s41379-020-0504-5. Epub 2020 Mar 11. PMID: 32161378

10.     Development of a miniaturized 3D organoid culture platform for ultra-high throughput screening. 

Du Y, Li X, Niu Q, Mo X, Qui M, Ma T, Kuo CJ, Fu H. J Mol Cell Biol. 2020 Jul 17:mjaa036. doi: 10.1093/jmcb/mjaa036. Online ahead of print. PMID: 32678871

1.          Symptomatic SARS-CoV-2 infections display specific IgG Fc structures. 

Chakraborty S, Edwards K, Buzzanco AS, Memoli MJ, Sherwood R, Mallajosyula V, Xie MM, Gonzalez J, Buffone C, Kathale N, Providenza S, Jagannathan P, Andrews JR, Blish CA, Krammer F, Dugan H, Wilson PC, Pham TD, Boyd SD, Zhang S, Taubenberger JK, Morales T, Schapiro JM, Parsonnet J, Wang TT. medRxiv. 2020 May 18:2020.05.15.20103341. doi: 10.1101/2020.05.15.20103341. Preprint. PMID: 32511463 Free PMC article. Updated.

2.          Reduced Exposure to Piperaquine, Compared to Adults, in Young Children Receiving Dihydroartemisinin-Piperaquine as Malaria Chemoprevention. 

Whalen ME, Kajubi R, Chamankhah N, Huang L, Orukan F, Wallender E, Kamya MR, Dorsey G, Jagannathan P, Rosenthal PJ, Mwebaza N, Aweeka FT. Clin Pharmacol Ther. 2019 Dec;106(6):1310-1318. doi: 10.1002/cpt.1534. Epub 2019 Jul 22. PMID: 31173649

3.          FcRn, but not FcγRs, drives maternal-fetal transplacental transport of human IgG antibodies. 

Borghi S, Bournazos S, Thulin NK, Li C, Gajewski A, Sherwood RW, Zhang S, Harris E, Jagannathan P, Wang LX, Ravetch JV, Wang TT. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12943-12951. doi: 10.1073/pnas.2004325117. Epub 2020 May 27. PMID: 32461366

4.          Variations in killer-cell immunoglobulin-like receptor and human leukocyte antigen genes and immunity to malaria. 

Tukwasibwe S, Nakimuli A, Traherne J, Chazara O, Jayaraman J, Trowsdale J, Moffett A, Jagannathan P, Rosenthal PJ, Cose S, Colucci F. Cell Mol Immunol. 2020 Aug;17(8):799-806. doi: 10.1038/s41423-020-0482-z. Epub 2020 Jun 15. PMID: 32541835 Free PMC article. Review.

5.          Piperaquine exposure is altered by pregnancy, HIV and nutritional status in Ugandan women. 

Hughes E, Imperial M, Wallender E, Kajubi R, Huang L, Jagannathan P, Zhang N, Kakuru A, Natureeba P, Mwima MW, Muhindo M, Mwebaza N, Clark TD, Opira B, Nakalembe M, Havlir D, Kamya M, Rosenthal PJ, Dorsey G, Aweeka F, Savic RM. Antimicrob Agents Chemother. 2020 Oct 5:AAC.01013-20. doi: 10.1128/AAC.01013-20. Online ahead of print. PMID: 33020153

6.          Generation of a malaria negative Ugandan birth weight standard for the diagnosis of small for gestational age. 

Zakama AK, Weekes T, Kajubi R, Kakuru A, Ategeka J, Kamya M, Muhindo MK, Havlir D, Jagannathan P, Dorsey G, Gaw SL. PLoS One. 2020 Oct 2;15(10):e0240157. doi: 10.1371/journal.pone.0240157. eCollection 2020. PMID: 33007041 Free PMC article.

7.          Relationships Between Measures of Malaria at Delivery and Adverse Birth Outcomes in a High-Transmission Area of Uganda. 

Ategeka J, Kakuru A, Kajubi R, Wasswa R, Ochokoru H, Arinaitwe E, Yeka A, Jagannathan P, Kamya MR, Muehlenbachs A, Chico RM, Dorsey G. J Infect Dis. 2020 Aug 4;222(5):863-870. doi: 10.1093/infdis/jiaa156. PMID: 32249917

8.          The Impact of Control Interventions on Malaria Burden in Young Children in a Historically High-Transmission District of Uganda: A Pooled Analysis of Cohort Studies from 2007 to 2018. 

Kamya MR, Kakuru A, Muhindo M, Arinaitwe E, Nankabirwa JI, Rek J, Bigira V, Kapisi J, Wanzira H, Achan J, Natureeba P, Gasasira A, Havlir D, Jagannathan P, Rosenthal PJ, Rodriguez-Barraquer I, Dorsey G. Am J Trop Med Hyg. 2020 Aug;103(2):785-792. doi: 10.4269/ajtmh.20-0100. Epub 2020 May 14. PMID: 32431280 Free PMC article.

9.          Opsonized antigen activates Vδ2+ T cells via CD16/FCγRIIIa in individuals with chronic malaria exposure. 

Farrington LA, Callaway PC, Vance HM, Baskevitch K, Lutz E, Warrier L, McIntyre TI, Budker R, Jagannathan P, Nankya F, Musinguzi K, Nalubega M, Sikyomu E, Naluwu K, Arinaitwe E, Dorsey G, Kamya MR, Feeney ME. PLoS Pathog. 2020 Oct 21;16(10):e1008997. doi: 10.1371/journal.ppat.1008997. eCollection 2020 Oct. PMID: 33085728 Free PMC article.

10.     Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response. 

Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N. Clin Infect Dis. 2020 Oct 9:ciaa1537. doi: 10.1093/cid/ciaa1537. Online ahead of print. PMID: 33035306

11.     Sex-based differences in clearance of chronic Plasmodium falciparum infection. 

Briggs J, Teyssier N, Nankabirwa JI, Rek J, Jagannathan P, Arinaitwe E, Bousema T, Drakeley C, Murray M, Crawford E, Hathaway N, Staedke SG, Smith D, Rosenthal PJ, Kamya M, Dorsey G, Rodriguez-Barraquer I, Greenhouse B. Elife. 2020 Oct 27;9:e59872. doi: 10.7554/eLife.59872. PMID: 33107430 Free PMC article.

12.     Impact of intermittent preventive treatment of malaria in pregnancy with dihydroartemisinin-piperaquine versus sulfadoxine-pyrimethamine on the incidence of malaria in infancy: a randomized controlled trial. 

Kakuru A, Jagannathan P, Kajubi R, Ochieng T, Ochokoru H, Nakalembe M, Clark TD, Ruel T, Staedke SG, Chandramohan D, Havlir DV, Kamya MR, Dorsey G. BMC Med. 2020 Aug 10;18(1):207. doi: 10.1186/s12916-020-01675-x. PMID: 32772921 Free PMC article.

13.     Maternal Anti-Dengue IgG Fucosylation Predicts Susceptibility to Dengue Disease in Infants. 

Thulin NK, Brewer RC, Sherwood R, Bournazos S, Edwards KG, Ramadoss NS, Taubenberger JK, Memoli M, Gentles AJ, Jagannathan P, Zhang S, Libraty DH, Wang TT. Cell Rep. 2020 May 12;31(6):107642. doi: 10.1016/j.celrep.2020.107642. PMID: 32402275 Free PMC article.

14.     Proinflammatory IgG Fc structures in patients with severe COVID-19. 

Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, Pham TD, Boyd SD, Nadeau KC, Pinsky BA, Zhang S, Memoli MJ, Taubenberger JK, Morales T, Schapiro JM, Tan GS, Jagannathan P, Wang TT. Nat Immunol. 2020 Nov 9. doi: 10.1038/s41590-020-00828-7. Online ahead of print. PMID: 33169014

1.          Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). 

Cossarizza A, et al. Eur J Immunol. 2019 Oct;49(10):1457-1973. doi: 10.1002/eji.201970107. PMID: 31633216 Free PMC article.

2.          Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. 

Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B. Science. 2020 Sep 4;369(6508):1210-1220. doi: 10.1126/science.abc6261. Epub 2020 Aug 11. PMID: 32788292

3.          The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system. 

Tomic A, Tomic I, Dekker CL, Maecker HT, Davis MM. Sci Data. 2019 Oct 21;6(1):214. doi: 10.1038/s41597-019-0213-4. PMID: 31636302 Free PMC article.

4.          High-Parameter Immune Profiling with CyTOF. 

Sahaf B, Rahman A, Maecker HT, Bendall SC. Methods Mol Biol. 2020;2055:351-368. doi: 10.1007/978-1-4939-9773-2_16. PMID: 31502160

5.          Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis. 

Wilson JG, Simpson LJ, Ferreira AM, Rustagi A, Roque J, Asuni A, Ranganath T, Grant PM, Subramanian A, Rosenberg-Hasson Y, Maecker HT, Holmes SP, Levitt JE, Blish CA, Rogers AJ. JCI Insight. 2020 Sep 3;5(17):e140289. doi: 10.1172/jci.insight.140289. PMID: 32706339 Free PMC article.

6.          A Novel Utility to Correct for Plate/Batch/Lot and Nonspecific Binding Artifacts in Luminex Data. 

Maecker HT, Rosenberg-Hasson Y, Kolstad KD, Steen VD, Chung LS. J Immunol. 2020 Jun 15;204(12):3425-3433. doi: 10.4049/jimmunol.2000017. Epub 2020 May 6. PMID: 32376648

1.          Investigation of the role of typhoid toxin in acute typhoid fever in a human challenge model. 

Gibani MM, Jones E, Barton A, Jin C, Meek J, Camara S, Galal U, Heinz E, Rosenberg-Hasson Y, Obermoser G, Jones C, Campbell D, Black C, Thomaides-Brears H, Darlow C, Dold C, Silva-Reyes L, Blackwell L, Lara-Tejero M, Jiao X, Stack G, Blohmke CJ, Hill J, Angus B, Dougan G, Galán J, Pollard AJ. Nat Med. 2019 Jul;25(7):1082-1088. doi: 10.1038/s41591-019-0505-4. Epub 2019 Jul 3. PMID: 31270506 Free PMC article. Clinical Trial.

1.          Increased Tau Expression Correlates with Neuronal Maturation in the Developing Human Cerebral Cortex. 

Fiock KL, Smalley ME, Crary JF, Pasca AM, Hefti MM. eNeuro. 2020 May 28;7(3):ENEURO.0058-20.2020. doi: 10.1523/ENEURO.0058-20.2020. Print 2020 May/Jun. PMID: 32393582 Free PMC article.

1.          N6-Methyladenosine Modification Controls Circular RNA Immunity. 

Chen YG, Chen R, Ahmad S, Verma R, Kasturi SP, Amaya L, Broughton JP, Kim J, Cadena C, Pulendran B, Hur S, Chang HY. Mol Cell. 2019 Oct 3;76(1):96-109.e9. doi: 10.1016/j.molcel.2019.07.016. Epub 2019 Aug 29. PMID: 31474572 Free PMC article.

2.          Vaccine innovations for emerging infectious diseases-a symposium report. 

Cable J, Srikantiah P, Crowe JE Jr, Pulendran B, Hill A, Ginsberg A, Koff W, Mathew A, Ng T, Jansen K, Glenn G, Permar S, Wilson I, Weiner DB, Weissman D, Rappuoli R. Ann N Y Acad Sci. 2020 Feb;1462(1):14-26. doi: 10.1111/nyas.14235. Epub 2019 Oct 28. PMID: 31659752 Review.

3.          The science and medicine of human immunology. 

Pulendran B, Davis MM. Science. 2020 Sep 25;369(6511):eaay4014. doi: 10.1126/science.aay4014. PMID: 32973003 Review.

4.          Immunology taught by vaccines. 

Pulendran B. Science. 2019 Nov 29;366(6469):1074-1075. doi: 10.1126/science.aau6975. PMID: 31780544 No abstract available.

5.          Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. 

Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B. Science. 2020 Sep 4;369(6508):1210-1220. doi: 10.1126/science.abc6261. Epub 2020 Aug 11. PMID: 32788292

6.          Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses. 

Natrajan MS, Rouphael N, Lai L, Kazmin D, Jensen TL, Weiss DS, Ibegbu C, Sztein MB, Hooper WF, Hill H, Anderson EJ, Johnson R, Sanz P, Pulendran B, Goll JB, Mulligan MJ. Vaccines (Basel). 2019 Dec 24;8(1):4. doi: 10.3390/vaccines8010004. PMID: 31878161 Free PMC article.

7.          Adjuvanted H5N1 influenza vaccine enhances both cross-reactive memory B cell and strain-specific naive B cell responses in humans. 

Ellebedy AH, Nachbagauer R, Jackson KJL, Dai YN, Han J, Alsoussi WB, Davis CW, Stadlbauer D, Rouphael N, Chromikova V, McCausland M, Chang CY, Cortese M, Bower M, Chennareddy C, Schmitz AJ, Zarnitsyna VI, Lai L, Rajabhathor A, Kazemian C, Antia R, Mulligan MJ, Ward AB, Fremont DH, Boyd SD, Pulendran B, Krammer F, Ahmed R. Proc Natl Acad Sci U S A. 2020 Jul 28;117(30):17957-17964. doi: 10.1073/pnas.1906613117. Epub 2020 Jul 13. PMID: 32661157

8.          Systems Biological Analysis of Immune Response to Influenza Vaccination. 

Cortese M, Sherman AC, Rouphael NG, Pulendran B. Cold Spring Harb Perspect Med. 2020 Mar 9:a038596. doi: 10.1101/cshperspect.a038596. Online ahead of print. PMID: 32152245

9.          3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope-specific plasma cells and humoral immunity in nonhuman primates. 

Kasturi SP, Rasheed MAU, Havenar-Daughton C, Pham M, Legere T, Sher ZJ, Kovalenkov Y, Gumber S, Huang JY, Gottardo R, Fulp W, Sato A, Sawant S, Stanfield-Oakley S, Yates N, LaBranche C, Alam SM, Tomaras G, Ferrari G, Montefiori D, Wrammert J, Villinger F, Tomai M, Vasilakos J, Fox CB, Reed SG, Haynes BF, Crotty S, Ahmed R, Pulendran B. Sci Immunol. 2020 Jun 19;5(48):eabb1025. doi: 10.1126/sciimmunol.abb1025. PMID: 32561559

10.     The Impact of the Microbiome on Immunity to Vaccination in Humans. 

de Jong SE, Olin A, Pulendran B. Cell Host Microbe. 2020 Aug 12;28(2):169-179. doi: 10.1016/j.chom.2020.06.014. PMID: 32791110 Free PMC article. Review.

11.     Persistence of Varicella-Zoster Virus-Specific Plasma Cells in Adult Human Bone Marrow following Childhood Vaccination. 

Eberhardt CS, Wieland A, Nasti TH, Grifoni A, Wilson E, Schmid DS, Pulendran B, Sette A, Waller EK, Rouphael N, Ahmed R. J Virol. 2020 Jun 16;94(13):e02127-19. doi: 10.1128/JVI.02127-19. Print 2020 Jun 16. PMID: 32321817

12.     T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers. 

Arunachalam PS, Charles TP, Joag V, Bollimpelli VS, Scott MKD, Wimmers F, Burton SL, Labranche CC, Petitdemange C, Gangadhara S, Styles TM, Quarnstrom CF, Walter KA, Ketas TJ, Legere T, Jagadeesh Reddy PB, Kasturi SP, Tsai A, Yeung BZ, Gupta S, Tomai M, Vasilakos J, Shaw GM, Kang CY, Moore JP, Subramaniam S, Khatri P, Montefiori D, Kozlowski PA, Derdeyn CA, Hunter E, Masopust D, Amara RR, Pulendran B. Nat Med. 2020 Jun;26(6):932-940. doi: 10.1038/s41591-020-0858-8. Epub 2020 May 11. PMID: 32393800 Free PMC article.

13.     Emerging technologies for systems vaccinology - multi-omics integration and single-cell (epi)genomic profiling. 

Wimmers F, Pulendran B. Curr Opin Immunol. 2020 Jun 3;65:57-64. doi: 10.1016/j.coi.2020.05.001. Online ahead of print. PMID: 32504952 Review.

14.     Squalene emulsion-based vaccine adjuvants stimulate CD8 T cell, but not antibody responses, through a RIPK3-dependent pathway. 

Kim EH, Woodruff MC, Grigoryan L, Maier B, Lee SH, Mandal P, Cortese M, Natrajan MS, Ravindran R, Ma H, Merad M, Gitlin AD, Mocarski ES, Jacob J, Pulendran B. Elife. 2020 Jun 9;9:e52687. doi: 10.7554/eLife.52687. PMID: 32515732 Free PMC article.

15.     Injectable Hydrogels for Sustained Codelivery of Subunit Vaccines Enhance Humoral Immunity. 

Roth GA, Gale EC, Alcántara-Hernández M, Luo W, Axpe E, Verma R, Yin Q, Yu AC, Lopez Hernandez H, Maikawa CL, Smith AAA, Davis MM, Pulendran B, Idoyaga J, Appel EA. ACS Cent Sci. 2020 Oct 28;6(10):1800-1812. doi: 10.1021/acscentsci.0c00732. Epub 2020 Sep 16. PMID: 33145416 Free PMC article.

1.          Coupled Active Systems Encode an Emergent Hunting Behavior in the Unicellular Predator Lacrymaria olor. 

Coyle SM, Flaum EM, Li H, Krishnamurthy D, Prakash M. Curr Biol. 2019 Nov 18;29(22):3838-3850.e3. doi: 10.1016/j.cub.2019.09.034. Epub 2019 Oct 31. PMID: 31679941

2.          An investigation of Dirofilaria immitis infection and its effects on mosquito wingbeat frequencies. 

Park D, Bowles J, McKenzie B, Narayanan HV, Prakash M, Blagburn B, Starkey L, Zohdy S. Vet Parasitol. 2020 Jul;283:109112. doi: 10.1016/j.vetpar.2020.109112. Epub 2020 May 26. PMID: 32512421

3.          Scale-free vertical tracking microscopy. 

Krishnamurthy D, Li H, Benoit du Rey F, Cambournac P, Larson AG, Li E, Prakash M. Nat Methods. 2020 Oct;17(10):1040-1051. doi: 10.1038/s41592-020-0924-7. Epub 2020 Aug 17. PMID: 32807956

4.          BiteOscope, an open platform to study mosquito biting behavior. 

Hol FJ, Lambrechts L, Prakash M. Elife. 2020 Sep 22;9:e56829. doi: 10.7554/eLife.56829. PMID: 32960173 Free PMC article.

5.          Sensory Discrimination of Blood and Floral Nectar by Aedes aegypti Mosquitoes. 

Jové V, Gong Z, Hol FJH, Zhao Z, Sorrells TR, Carroll TS, Prakash M, McBride CS, Vosshall LB. Neuron. 2020 Oct 8:S0896-6273(20)30719-4. doi: 10.1016/j.neuron.2020.09.019. Online ahead of print. PMID: 33049200

1.          Landscape of coordinated immune responses to H1N1 challenge in humans. 

Rahil Z, Leylek R, Schürch CM, Chen H, Bjornson-Hooper Z, Christensen SR, Gherardini PF, Bhate SS, Spitzer MH, Fragiadakis GK, Mukherjee N, Kim N, Jiang S, Yo J, Gaudilliere B, Affrime M, Bock B, Hensley SE, Idoyaga J, Aghaeepour N, Kim K, Nolan GP, McIlwain DR. J Clin Invest. 2020 Nov 2;130(11):5800-5816. doi: 10.1172/JCI137265. PMID: 33044226

1.          Clades of huge phages from across Earth's ecosystems. 

Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, Matheus-Carnevali P, Sun C, Goltsman DSA, Borton MA, Sharrar A, Jaffe AL, Nelson TC, Kantor R, Keren R, Lane KR, Farag IF, Lei S, Finstad K, Amundson R, Anantharaman K, Zhou J, Probst AJ, Power ME, Tringe SG, Li WJ, Wrighton K, Harrison S, Morowitz M, Relman DA, Doudna JA, Lehours AC, Warren L, Cate JHD, Santini JM, Banfield JF. Nature. 2020 Feb;578(7795):425-431. doi: 10.1038/s41586-020-2007-4. Epub 2020 Feb 12. PMID: 32051592 Free PMC article.

2.          Microbial biogeography and ecology of the mouth and implications for periodontal diseases. 

Proctor DM, Shelef KM, Gonzalez A, Davis CL, Dethlefsen L, Burns AR, Loomer PM, Armitage GC, Ryder MI, Millman ME, Knight R, Holmes SP, Relman DA. Periodontol 2000. 2020 Feb;82(1):26-41. doi: 10.1111/prd.12268. PMID: 31850642 Review.

3.          Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. 

Yaffe E, Relman DA. Nat Microbiol. 2020 Feb;5(2):343-353. doi: 10.1038/s41564-019-0625-0. Epub 2019 Dec 23. PMID: 31873203 Free PMC article.

4.          Multiomic immune clockworks of pregnancy. 

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. PMID: 32020337 Free PMC article. Review.

5.          Thinking about the microbiome as a causal factor in human health and disease: philosophical and experimental considerations. 

Relman DA. Curr Opin Microbiol. 2020 Apr;54:119-126. doi: 10.1016/j.mib.2020.01.018. Epub 2020 Feb 27. PMID: 32114367 Review.

6.          Competitors versus Collaborators: Micronutrient Processing by Pathogenic and Commensal Human-Associated Gut Bacteria. 

Celis AI, Relman DA. Mol Cell. 2020 May 21;78(4):570-576. doi: 10.1016/j.molcel.2020.03.032. PMID: 32442503 Review.

7.          Microbiota assembly, structure, and dynamics among Tsimane horticulturalists of the Bolivian Amazon. 

Sprockett DD, Martin M, Costello EK, Burns AR, Holmes SP, Gurven MD, Relman DA. Nat Commun. 2020 Jul 29;11(1):3772. doi: 10.1038/s41467-020-17541-6. PMID: 32728114 Free PMC article.

8.          Opinion: To stop the next pandemic, we need to unravel the origins of COVID-19. 

Relman DA. Proc Natl Acad Sci U S A. 2020 Nov 3:202021133. doi: 10.1073/pnas.2021133117. Online ahead of print. PMID: 33144498 No abstract available.

9.          Towards personalized medicine in maternal and child health: integrating biologic and social determinants. 

Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, Mayo JA, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Sirota M, Snyder MP, Sylvester KG, Hao S, Wise PH, Shaw GM, Katz M. Pediatr Res. 2020 May 26. doi: 10.1038/s41390-020-0981-8. Online ahead of print. PMID: 32454518 No abstract available.

10.     Complete Genome Sequences of Six Lactobacillus iners Strains Isolated from the Human Vagina. 

France MT, Rutt L, Narina S, Arbaugh S, McComb E, Humphrys MS, Ma B, Hayward MR, Costello EK, Relman DA, Kwon DS, Ravel J. Microbiol Resour Announc. 2020 May 14;9(20):e00234-20. doi: 10.1128/MRA.00234-20. PMID: 32409537 Free PMC article.

1.          Independent control of the thermodynamic and kinetic properties of aptamer switches. 

Wilson BD, Hariri AA, Thompson IAP, Eisenstein M, Soh HT. Nat Commun. 2019 Nov 7;10(1):5079. doi: 10.1038/s41467-019-13137-x. PMID: 31699984 Free PMC article.

2.          A Dual-Sensing DNA Nanostructure with an Ultrabroad Detection Range. 

Kang B, Park SV, Soh HT, Oh SS. ACS Sens. 2019 Oct 25;4(10):2802-2808. doi: 10.1021/acssensors.9b01503. Epub 2019 Oct 10. PMID: 31547650

3.          Re-Evaluating the Conventional Wisdom about Binding Assays. 

Wilson BD, Soh HT. Trends Biochem Sci. 2020 Aug;45(8):639-649. doi: 10.1016/j.tibs.2020.04.005. Epub 2020 May 10. PMID: 32402748 Free PMC article. Review.

4.          Engineering Aptamer Switches for Multifunctional Stimulus-Responsive Nanosystems. 

Rangel AE, Hariri AA, Eisenstein M, Soh HT. Adv Mater. 2020 Nov 9:e2003704. doi: 10.1002/adma.202003704. Online ahead of print. PMID: 33165999 Review.

5.          Measuring Aptamer Folding Energy Using a Molecular Clamp. 

Qu H, Ma Q, Wang L, Mao Y, Eisenstein M, Soh HT, Zheng L. J Am Chem Soc. 2020 Jul 8;142(27):11743-11749. doi: 10.1021/jacs.0c01570. Epub 2020 Jun 22. PMID: 32491843

6.          Engineering the Interaction Dynamics between Nano-Topographical Immunocyte-Templated Micromotors across Scales from Ions to Cells. 

Wang J, Ahmed R, Zeng Y, Fu K, Soto F, Sinclair B, Soh HT, Demirci U. Small. 2020 Nov 10:e2005185. doi: 10.1002/smll.202005185. Online ahead of print. PMID: 33174334

7.          Rational design of aptamer switches with programmable pH response. 

Thompson IAP, Zheng L, Eisenstein M, Soh HT. Nat Commun. 2020 Jun 10;11(1):2946. doi: 10.1038/s41467-020-16808-2. PMID: 32522989 Free PMC article.

1.          Net Acceleration and Direct Measurement of Attosecond Electron Pulses in a Silicon Dielectric Laser Accelerator. 

Black DS, Niedermayer U, Miao Y, Zhao Z, Solgaard O, Byer RL, Leedle KJ. Phys Rev Lett. 2019 Dec 31;123(26):264802. doi: 10.1103/PhysRevLett.123.264802. PMID: 31951436

2.          On-chip integrated laser-driven particle accelerator. 

Sapra NV, Yang KY, Vercruysse D, Leedle KJ, Black DS, England RJ, Su L, Trivedi R, Miao Y, Solgaard O, Byer RL, Vučkovicć J. Science. 2020 Jan 3;367(6473):79-83. doi: 10.1126/science.aay5734. PMID: 31896715

3.          High-speed axially swept light sheet microscopy using a linear MEMS phased array for isotropic resolution. 

Landry J, Hamann S, Solgaard O. J Biomed Opt. 2020 Oct;25(10). doi: 10.1117/1.JBO.25.10.106504. PMID: 33098281

1.          Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). 

Cossarizza A, et al. Eur J Immunol. 2019 Oct;49(10):1457-1973. doi: 10.1002/eji.201970107. PMID: 31633216 Free PMC article.

2.          Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. 

Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B. Science. 2020 Sep 4;369(6508):1210-1220. doi: 10.1126/science.abc6261. Epub 2020 Aug 11. PMID: 32788292

3.          The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system. 

Tomic A, Tomic I, Dekker CL, Maecker HT, Davis MM. Sci Data. 2019 Oct 21;6(1):214. doi: 10.1038/s41597-019-0213-4. PMID: 31636302 Free PMC article.

4.          Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis. 

Wilson JG, Simpson LJ, Ferreira AM, Rustagi A, Roque J, Asuni A, Ranganath T, Grant PM, Subramanian A, Rosenberg-Hasson Y, Maecker HT, Holmes SP, Levitt JE, Blish CA, Rogers AJ. JCI Insight. 2020 Sep 3;5(17):e140289. doi: 10.1172/jci.insight.140289. PMID: 32706339 Free PMC article.

1.          Molecular Choreography of Acute Exercise. 

Contrepois K, Wu S, Moneghetti KJ, Hornburg D, Ahadi S, Tsai MS, Metwally AA, Wei E, Lee-McMullen B, Quijada JV, Chen S, Christle JW, Ellenberger M, Balliu B, Taylor S, Durrant MG, Knowles DA, Choudhry H, Ashland M, Bahmani A, Enslen B, Amsallem M, Kobayashi Y, Avina M, Perelman D, Schüssler-Fiorenza Rose SM, Zhou W, Ashley EA, Montgomery SB, Chaib H, Haddad F, Snyder MP. Cell. 2020 May 28;181(5):1112-1130.e16. doi: 10.1016/j.cell.2020.04.043. PMID: 32470399

2.          The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution. 

Rozenblatt-Rosen O, Regev A, Oberdoerffer P, Nawy T, Hupalowska A, Rood JE, Ashenberg O, Cerami E, Coffey RJ, Demir E, Ding L, Esplin ED, Ford JM, Goecks J, Ghosh S, Gray JW, Guinney J, Hanlon SE, Hughes SK, Hwang ES, Iacobuzio-Donahue CA, Jané-Valbuena J, Johnson BE, Lau KS, Lively T, Mazzilli SA, Pe'er D, Santagata S, Shalek AK, Schapiro D, Snyder MP, Sorger PK, Spira AE, Srivastava S, Tan K, West RB, Williams EH; Human Tumor Atlas Network. Cell. 2020 Apr 16;181(2):236-249. doi: 10.1016/j.cell.2020.03.053. PMID: 32302568 Review.

3.          A Quantitative Proteome Map of the Human Body. 

Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE; GTEx Consortium, Snyder MP. Cell. 2020 Oct 1;183(1):269-283.e19. doi: 10.1016/j.cell.2020.08.036. Epub 2020 Sep 10. PMID: 32916130

4.          Deep Characterization of the Human Antibody Response to Natural Infection Using Longitudinal Immune Repertoire Sequencing. 

Mitsunaga EM, Snyder MP. Mol Cell Proteomics. 2020 Feb;19(2):278-293. doi: 10.1074/mcp.RA119.001633. Epub 2019 Nov 25. PMID: 31767621 Free PMC article.

5.          Multiomic immune clockworks of pregnancy. 

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. PMID: 32020337 Free PMC article. Review.

6.          Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension. 

Reyes-Palomares A, Gu M, Grubert F, Berest I, Sa S, Kasowski M, Arnold C, Shuai M, Srivas R, Miao S, Li D, Snyder MP, Rabinovitch M, Zaugg JB. Nat Commun. 2020 Apr 3;11(1):1673. doi: 10.1038/s41467-020-15463-x. PMID: 32245974 Free PMC article.

7.          Towards personalized medicine in maternal and child health: integrating biologic and social determinants. 

Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, Mayo JA, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Sirota M, Snyder MP, Sylvester KG, Hao S, Wise PH, Shaw GM, Katz M. Pediatr Res. 2020 May 26. doi: 10.1038/s41390-020-0981-8. Online ahead of print. PMID: 32454518 No abstract available.

1.          Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. 

Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. Cell Rep. 2019 Nov 12;29(7):1961-1973.e4. doi: 10.1016/j.celrep.2019.10.019. PMID: 31722210 Free PMC article.

1.          An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity. 

Glass DR, Tsai AG, Oliveria JP, Hartmann FJ, Kimmey SC, Calderon AA, Borges L, Glass MC, Wagar LE, Davis MM, Bendall SC. Immunity. 2020 Jul 14;53(1):217-232.e5. doi: 10.1016/j.immuni.2020.06.013. PMID: 32668225 Free PMC article.

2.          Increased T Cell Differentiation and Cytolytic Function in Bangladeshi Compared to American Children.

Wagar LE, Bolen CR, Sigal N, Lopez Angel CJ, Guan L, Kirkpatrick BD, Haque R, Tibshirani RJ, Parsonnet J, Petri WA Jr, Davis MM. Front Immunol. 2019 Sep 20;10:2239. doi: 10.3389/fimmu.2019.02239. eCollection 2019. PMID: 31620139 Free PMC article.

1.          Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19. 

Blanco-Melo D, Nilsson-Payant BE, Liu WC, Uhl S, Hoagland D, Møller R, Jordan TX, Oishi K, Panis M, Sachs D, Wang TT, Schwartz RE, Lim JK, Albrecht RA, tenOever BR. Cell. 2020 May 28;181(5):1036-1045.e9. doi: 10.1016/j.cell.2020.04.026. Epub 2020 May 15. PMID: 32416070 Free PMC article.

2.          Symptomatic SARS-CoV-2 infections display specific IgG Fc structures. 

Chakraborty S, Edwards K, Buzzanco AS, Memoli MJ, Sherwood R, Mallajosyula V, Xie MM, Gonzalez J, Buffone C, Kathale N, Providenza S, Jagannathan P, Andrews JR, Blish CA, Krammer F, Dugan H, Wilson PC, Pham TD, Boyd SD, Zhang S, Taubenberger JK, Morales T, Schapiro JM, Parsonnet J, Wang TT. medRxiv. 2020 May 18:2020.05.15.20103341. doi: 10.1101/2020.05.15.20103341. Preprint. PMID: 32511463 Free PMC article. Updated.

3.          Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Jean GH, Stevens BA, Lee JY, Rustagi A, Rogers AJ, Powell AE, Hunter M, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Nadeau KC, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, Blish CA, Boyd SD. Cell Host Microbe. 2020 Oct 7;28(4):516-525.e5. doi: 10.1016/j.chom.2020.09.002. Epub 2020 Sep 3. PMID: 32941787 Free PMC article.

4.          B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Hoh RA, Jackson KJL, Roeltgen K, Lee JY, Rustagi A, Rogers AJ, Powell AE, Kim PS, Wang TT, Pinsky B, Blish CA, Boyd SD. Res Sq. 2020 May 6:rs.3.rs-27220. doi: 10.21203/rs.3.rs-27220/v1. Preprint. PMID: 32702737 Free PMC article. Updated.

5.          FcRn, but not FcγRs, drives maternal-fetal transplacental transport of human IgG antibodies. 

Borghi S, Bournazos S, Thulin NK, Li C, Gajewski A, Sherwood RW, Zhang S, Harris E, Jagannathan P, Wang LX, Ravetch JV, Wang TT. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12943-12951. doi: 10.1073/pnas.2004325117. Epub 2020 May 27. PMID: 32461366

6.          Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2. 

Nielsen SCA, Yang F, Jackson KJL, Hoh RA, Röltgen K, Stevens B, Lee JY, Rustagi A, Rogers AJ, Powell AE, Najeeb J, Otrelo-Cardoso AR, Yost KE, Daniel B, Chang HY, Satpathy AT, Jardetzky TS, Kim PS, Wang TT, Pinsky BA, Blish CA, Boyd SD. bioRxiv. 2020 Jul 9:2020.07.08.194456. doi: 10.1101/2020.07.08.194456. Preprint. PMID: 32676593 Free PMC article. Updated.

7.          Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding. 

Byrnes JR, Zhou XX, Lui I, Elledge SK, Glasgow JE, Lim SA, Loudermilk RP, Chiu CY, Wang TT, Wilson MR, Leung KK, Wells JA. mSphere. 2020 Sep 16;5(5):e00802-20. doi: 10.1128/mSphere.00802-20. PMID: 32938700 Free PMC article.

8.          Immunoglobulin E sialylation regulates allergic responses. 

Xie MM, Bertozzi CR, Wang TT. Immunol Cell Biol. 2020 Sep;98(8):617-619. doi: 10.1111/imcb.12368. Epub 2020 Jul 7. PMID: 32632971

9.          Maternal Anti-Dengue IgG Fucosylation Predicts Susceptibility to Dengue Disease in Infants. 

Thulin NK, Brewer RC, Sherwood R, Bournazos S, Edwards KG, Ramadoss NS, Taubenberger JK, Memoli M, Gentles AJ, Jagannathan P, Zhang S, Libraty DH, Wang TT. Cell Rep. 2020 May 12;31(6):107642. doi: 10.1016/j.celrep.2020.107642. PMID: 32402275 Free PMC article.

10.     Proinflammatory IgG Fc structures in patients with severe COVID-19. 

Chakraborty S, Gonzalez J, Edwards K, Mallajosyula V, Buzzanco AS, Sherwood R, Buffone C, Kathale N, Providenza S, Xie MM, Andrews JR, Blish CA, Singh U, Dugan H, Wilson PC, Pham TD, Boyd SD, Nadeau KC, Pinsky BA, Zhang S, Memoli MJ, Taubenberger JK, Morales T, Schapiro JM, Tan GS, Jagannathan P, Wang TT. Nat Immunol. 2020 Nov 9. doi: 10.1038/s41590-020-00828-7. Online ahead of print. PMID: 33169014

1.          Insight into the pediatric and adult dichotomy of COVID-19: Age-related differences in the immune response to SARS-CoV-2 infection. 

Fialkowski A, Gernez Y, Arya P, Weinacht KG, Kinane TB, Yonker LM. Pediatr Pulmonol. 2020 Jul 25. doi: 10.1002/ppul.24981. Online ahead of print. PMID: 32710693 Review.

1.          Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. 

Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, Leung WS, Chan JMC, Chik TSH, Choi CYC, Huerta C, Paine McCullough M, Lv H, Anderson E, Edupuganti S, Upadhyay AA, Bosinger SE, Maecker HT, Khatri P, Rouphael N, Peiris M, Pulendran B. Science. 2020 Sep 4;369(6508):1210-1220. doi: 10.1126/science.abc6261. Epub 2020 Aug 11. PMID: 32788292

2.          T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers. 

Arunachalam PS, Charles TP, Joag V, Bollimpelli VS, Scott MKD, Wimmers F, Burton SL, Labranche CC, Petitdemange C, Gangadhara S, Styles TM, Quarnstrom CF, Walter KA, Ketas TJ, Legere T, Jagadeesh Reddy PB, Kasturi SP, Tsai A, Yeung BZ, Gupta S, Tomai M, Vasilakos J, Shaw GM, Kang CY, Moore JP, Subramaniam S, Khatri P, Montefiori D, Kozlowski PA, Derdeyn CA, Hunter E, Masopust D, Amara RR, Pulendran B. Nat Med. 2020 Jun;26(6):932-940. doi: 10.1038/s41591-020-0858-8. Epub 2020 May 11. PMID: 32393800 Free PMC article.

3.          Emerging technologies for systems vaccinology - multi-omics integration and single-cell (epi)genomic profiling. 

Wimmers F, Pulendran B. Curr Opin Immunol. 2020 Jun 3;65:57-64. doi: 10.1016/j.coi.2020.05.001. Online ahead of print. PMID: 32504952 Review.

1.          Maternal Vascular Health in Pregnancy and Postpartum After Assisted Reproduction. 

von Versen-Höynck F, Häckl S, Selamet Tierney ES, Conrad KP, Baker VL, Winn VD. Hypertension. 2020 Feb;75(2):549-560. doi: 10.1161/HYPERTENSIONAHA.119.13779. Epub 2019 Dec 16. PMID: 31838910

2.          Multiomic immune clockworks of pregnancy. 

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. PMID: 32020337 Free PMC article. Review.

3.          Changes in pregnancy-related serum biomarkers early in gestation are associated with later development of preeclampsia. 

Hao S, You J, Chen L, Zhao H, Huang Y, Zheng L, Tian L, Maric I, Liu X, Li T, Bianco YK, Winn VD, Aghaeepour N, Gaudilliere B, Angst MS, Zhou X, Li YM, Mo L, Wong RJ, Shaw GM, Stevenson DK, Cohen HJ, Mcelhinney DB, Sylvester KG, Ling XB. PLoS One. 2020 Mar 3;15(3):e0230000. doi: 10.1371/journal.pone.0230000. eCollection 2020. PMID: 32126118 Free PMC article.

4.          Data-driven queries between medications and spontaneous preterm birth among 2.5 million pregnancies. 

Marić I, Winn VD, Borisenko E, Weber KA, Wong RJ, Aziz N, Blumenfeld YJ, El-Sayed YY, Stevenson DK, Shaw GM. Birth Defects Res. 2019 Oct 1;111(16):1145-1153. doi: 10.1002/bdr2.1580. Epub 2019 Aug 21. PMID: 31433567

5.          Uteroplacental Ischemia Is Associated with Increased PAPP-A2. 

Lamale-Smith LM, Gumina DL, Kramer AW, Browne VA, Toledo-Jaldin L, Julian CG, Winn VD, Moore LG. Reprod Sci. 2020 Feb;27(2):529-536. doi: 10.1007/s43032-019-00050-3. Epub 2020 Jan 28. PMID: 31994005 Free PMC article.

6.          Examining Sex Differences in the Human Placental Transcriptome During the First Fetal Androgen Peak. 

Braun AE, Muench KL, Robinson BG, Wang A, Palmer TD, Winn VD. Reprod Sci. 2020 Nov 4. doi: 10.1007/s43032-020-00355-8. Online ahead of print. PMID: 33150487