ITI Members: 2022 Publications
Publications authored and co-authored by Stanford Institute for Immunity, Transplantation and Infection (ITI) are listed below by month.
Institute members have multiple affiliations, including Stanford University School of Medicine, other Stanford University schools and programs, Stanford Hospital & Clinics, Lucile Packard Children's Hospital at Stanford and the Veterans' Affairs Palo Alto Health Care System. The Institute promotes interdisciplinary collaboration among clinicians, engineers, basic and social scientists and researchers, to solve the big questions in the human immune system.
March
2022 Publications
February
2022 Publications
1: Locke FL, Miklos DB, Jacobson CA, Perales MA, Kersten MJ, Oluwole OO, Ghobadi A, Rapoport AP, McGuirk J, Pagel JM, Muñoz J, Farooq U, van Meerten T, Reagan PM, Sureda A, Flinn IW, Vandenberghe P, Song KW, Dickinson M, Minnema MC, Riedell PA, Leslie LA, Chaganti S, Yang Y, Filosto S, Shah J, Schupp M, To C, Cheng P, Gordon LI, Westin JR; All ZUMA-7 Investigators and Contributing Kite Members.
Axicabtagene Ciloleucel as Second-Line Therapy for Large B-Cell Lymphoma.
N Engl J Med. 2022 Feb 17;386(7):640-654. doi: 10.1056/NEJMoa2116133.Epub 2021 Dec 11. PMID: 34891224.
2: Yang AC, Vest RT, Kern F, Lee DP, Agam M, Maat CA, Losada PM, Chen MB, Schaum N, Khoury N, Toland A, Calcuttawala K, Shin H, Pálovics R, Shin A, Wang EY, Luo J, Gate D, Schulz-Schaeffer WJ, Chu P, Siegenthaler JA, McNerney MW, Keller A, Wyss-Coray T.
A human brain vascular atlas reveals diverse mediators of Alzheimer's risk.
Nature. 2022 Feb 14. doi: 10.1038/s41586-021-04369-3. Epub ahead of print. PMID: 35165441.
3: Brough HA, Lanser BJ, Sindher SB, Teng JMC, Leung DYM, Venter C, Chan SM, Santos AF, Bahnson HT, Guttman-Yassky E, Gupta RS, Lack G, Ciaccio CE, Sampath V, Nadeau KC, Nagler CR.
Early intervention and prevention of allergic diseases.
Allergy. 2022 Feb;77(2):416-441. doi: 10.1111/all.15006. Epub 2021 Sep 7. PMID:
34255344.
4: Jahng JWS, Zhang M, Wu JC.
The role of metabolism in directed differentiationversus trans-differentiation of cardiomyocytes.
Semin Cell Dev Biol. 2022 Feb;122:56-65. doi: 10.1016/j.semcdb.2021.05.018. Epub 2021 May 29. PMID:
34074592; PMCID: PMC8725317.
5: Wilcox NS, Rotz SJ, Mullen M, Song EJ, Ky Hamilton B, Moslehi J, Armenian SH,
Wu JC, Rhee JW, Ky B.
Sex-Specific Cardiovascular Risks of Cancer and Its Therapies.
Circ Res. 2022 Feb 18;130(4):632-651. doi: 10.1161/CIRCRESAHA.121.319901. Epub 2022 Feb 17. PMID: 35175846.
6: Nishiga M, Liu C, Qi LS, Wu JC.
The use of new CRISPR tools in cardiovascular research and medicine.
Nat Rev Cardiol. 2022 Feb 10. doi:10.1038/s41569-021-00669-3. Epub ahead of print. PMID: 35145236.
7: Netea MG, Domínguez-Andrés J, van de Veerdonk FL, van Crevel R, Pulendran B, van der Meer JWM.
Natural resistance against infections: focus on COVID-19.
Trends Immunol. 2022 Feb;43(2):106-116. doi: 10.1016/j.it.2021.12.001. Epub 2021 Dec 7. PMID: 34924297; PMCID: PMC8648669.
8: Moufarrej MN, Vorperian SK, Wong RJ, Campos AA, Quaintance CC, Sit RV, Tan M, Detweiler AM, Mekonen H, Neff NF, Baruch-Gravett C, Litch JA, Druzin ML, Winn VD, Shaw GM, Stevenson DK, Quake SR.
Early prediction of preeclampsia in pregnancy with cell-free RNA.
Nature. 2022 Feb;602(7898):689-694. doi:10.1038/s41586-022-04410-z. Epub 2022 Feb 9. PMID: 35140405.
9: Pillet S, Arunachalam PS, Andreani G, Golden N, Fontenot J, Aye PP, Röltgen K, Lehmicke G, Gobeil P, Dubé C, Trépanier S, Charland N, D'Aoust MA, Russell-Lodrigue K, Monjure C, Blair RV, Boyd SD, Bohm RP, Rappaport J, Villinger F, Landry N, Pulendran B, Ward BJ.
Safety, immunogenicity, and protection provided by unadjuvanted and adjuvanted formulations of a recombinant plant-derived virus-like particle vaccine candidate for COVID-19 in nonhuman primates.
Cell Mol Immunol. 2022 Feb;19(2):222-233. doi: 10.1038/s41423-021-00809-2. Epub 2022 Jan 5. PMID: 34983950; PMCID: PMC8727235.
10: Auladell M, Phuong HVM, Mai LTQ, Tseng YY, Carolan L, Wilks S, Thai PQ,Price D, Duong NT, Hang NLK, Thanh LT, Thuong NTH, Huong TTK, Diep NTN, Bich VTN, Khvorov A, Hensen L, Duong TN, Kedzierska K, Anh DD, Wertheim H, Boyd SD, Good-Jacobson KL, Smith D, Barr I, Sullivan S, van Doorn HR, Fox A.
Influenza virus infection history shapes antibody responses to influenza vaccination.
Nat Med. 2022 Feb;28(2):363-372. doi: 10.1038/s41591-022-01690-w. Epub 2022 Feb 17.PMID: 35177857.
January
2022 Publications
1: Robinson WH, Steinman L.
Epstein-Barr virus and multiple sclerosis. Science.
2022 Jan 21;375(6578):264-265. doi: 10.1126/science.abm7930. Epub 2022 Jan 13.PMID: 35025606.
2: Zhang S, Cooper-Knock J, Weimer AK, Shi M, Moll T, Marshall JNG, Harvey C,Nezhad HG, Franklin J, Souza CDS, Ning K, Wang C, Li J, Dilliott AA, Farhan S,Elhaik E, Pasniceanu I, Livesey MR, Eitan C, Hornstein E, Kenna KP; Project MinE ALS Sequencing Consortium, Veldink JH, Ferraiuolo L, Shaw PJ, Snyder MP.
Genomewide identification of the genetic basis of amyotrophic lateral sclerosis.
Neuron. 2022 Jan 11:S0896-6273(21)01036-9. doi: 10.1016/j.neuron.2021.12.019.Epub ahead of print. PMID: 35045337.
3: Rasmussen M, Reddy M, Nolan R, Camunas-Soler J, Khodursky A, Scheller NM,Cantonwine DE, Engelbrechtsen L, Mi JD, Dutta A, Brundage T, Siddiqui F, Thao M,Gee EPS, La J, Baruch-Gravett C, Santillan MK, Deb S, Ame SM, Ali SM, Adkins M,DePristo MA, Lee M, Namsaraev E, Gybel-Brask DJ, Skibsted L, Litch JA, Santillan DA, Sazawal S, Tribe RM, Roberts JM, Jain M, Høgdall E, Holzman C, Quake SR,Elovitz MA, McElrath TF.
RNA profiles reveal signatures of future health and disease in pregnancy.
Nature. 2022 Jan;601(7893):422-427. doi:10.1038/s41586-021-04249-w. Epub 2022 Jan 5. PMID: 34987224; PMCID: PMC8770117.
4: Su Y, Yuan D, Chen DG, Ng RH, Wang K, Choi J, Li S, Hong S, Zhang R, Xie J,Kornilov SA, Scherler K, Pavlovitch-Bedzyk AJ, Dong S, Lausted C, Lee I, Fallen S, Dai CL, Baloni P, Smith B, Duvvuri VR, Anderson KG, Li J, Yang F, Duncombe CJ, McCulloch DJ, Rostomily C, Troisch P, Zhou J, Mackay S, DeGottardi Q, May DH, Taniguchi R, Gittelman RM, Klinger M, Snyder TM, Roper R, Wojciechowska G,Murray K, Edmark R, Evans S, Jones L, Zhou Y, Rowen L, Liu R, Chour W, AlgrenHA, Berrington WR, Wallick JA, Cochran RA, Micikas ME; ISB-Swedish COVID-19 Biobanking Unit, Wrin T, Petropoulos CJ, Cole HR, Fischer TD, Wei W, Hoon DSB,Price ND, Subramanian N, Hill JA, Hadlock J, Magis AT, Ribas A, Lanier LL, Boyd SD, Bluestone JA, Chu H, Hood L, Gottardo R, Greenberg PD, Davis MM, Goldman JD,Heath JR. Multiple early factors anticipate post-acute COVID-19 sequelae.
Cell.2022 Mar 3;185(5):881-895.e20. doi: 10.1016/j.cell.2022.01.014. Epub 2022 Jan25. PMID: 35216672; PMCID: PMC8786632.
5: Lanz TV, Brewer RC, Ho PP, Moon JS, Jude KM, Fernandez D, Fernandes RA, Gomez AM, Nadj GS, Bartley CM, Schubert RD, Hawes IA, Vazquez SE, Iyer M, Zuchero JB,Teegen B, Dunn JE, Lock CB, Kipp LB, Cotham VC, Ueberheide BM, Aftab BT,Anderson MS, DeRisi JL, Wilson MR, Bashford-Rogers RJM, Platten M, Garcia KC,Steinman L, Robinson WH.
Clonally expanded B cells in multiple sclerosis bind
EBV EBNA1 and GlialCAM. Nature. 2022 Jan 24. doi: 10.1038/s41586-022-04432-7.Epub ahead of print. PMID: 35073561.
6: Lynn DJ, Benson SC, Lynn MA, Pulendran B.
Modulation of immune responses to vaccination by the microbiota: implications and potential mechanisms.
Nat RevImmunol. 2022 Jan;22(1):33-46. doi: 10.1038/s41577-021-00554-7. Epub 2021 May17. PMID: 34002068; PMCID: PMC8127454.
7: Agache I, Sampath V, Aguilera J, Akdis C, Akdis M, Barry M, Bouagnon A,Chinthrajah S, Collins W, Dulitzki C, Erny B, Gomez J, Goshua A, Jutel M, KizerKW, Kline O, LaBeaud AD, Pali-Schöll I, Perrett KP, Peters RL, Plaza MP,Prunicki M, Sack T, Salas RN, Sindher SB, Sokolow SH, Thiel C, Veidis E, WrayBD, Traidl-Hoffmann C, Witt C, Nadeau KC.
Climate change and global health: A call to more research and more action.
Allergy. 2022 Jan 24. doi:10.1111/all.15229. Epub ahead of print. PMID: 35073410.
8: Chakraborty S, Gonzalez JC, Sievers BL, Mallajosyula V, Chakraborty S, DubeyM, Ashraf U, Cheng BY, Kathale N, Tran KQT, Scallan C, Sinnott A, Cassidy A,Chen ST, Gelbart T, Gao F, Golan Y, Ji X, Kim-Schulze S, Prahl M, Gaw SL,Gnjatic S, Marron TU, Merad M, Arunachalam PS, Boyd SD, Davis MM, Holubar M,Khosla C, Maecker HT, Maldonado Y, Mellins ED, Nadeau KC, Pulendran B, Singh U,Subramanian A, Utz PJ, Sherwood R, Zhang S, Jagannathan P, Tan GS, Wang TT.
Early non-neutralizing, afucosylated antibody responses are associated withCOVID-19 severity.
Sci Transl Med. 2022 Jan 18:eabm7853. doi:10.1126/scitranslmed.abm7853. Epub ahead of print. PMID: 35040666.
9: Elazar M, Glenn JS.
Combination of Novel Therapies for HDV.
Viruses. 2022 Jan28;14(2):268. doi: 10.3390/v14020268. PMID: 35215860; PMCID: PMC8877160.
10: Pillet S, Arunachalam PS, Andreani G, Golden N, Fontenot J, Aye PP, RöltgenK, Lehmicke G, Gobeil P, Dubé C, Trépanier S, Charland N, D'Aoust MA, Russell-Lodrigue K, Monjure C, Blair RV, Boyd SD, Bohm RP, Rappaport J, Villinger F,Landry N, Pulendran B, Ward BJ.
Safety, immunogenicity, and protection provided by unadjuvanted and adjuvanted formulations of a recombinant plant-derived virus-like particle vaccine candidate for COVID-19 in nonhuman primates.
Cell Mol Immunol. 2022 Feb;19(2):222-233. doi: 10.1038/s41423-021-00809-2. Epub 2022
Jan 5. PMID: 34983950; PMCID: PMC8727235.
11: Lee MY, Bedia JS, Bhate SS, Barlow GL, Phillips D, Fantl WJ, Nolan GP,
Schürch CM. CellSeg: a robust, pre-trained nucleus segmentation and pixel
quantification software for highly multiplexed fluorescence images. BMC
Bioinformatics. 2022 Jan 18;23(1):46. doi: 10.1186/s12859-022-04570-9. PMID:
35042474; PMCID: PMC8767664.
12: Lee A, Shelton E, Bidwell S, Shankar K, Ando K, Gaudilliere B, Shelton A,
Kin C. Association of Prehabilitation With Postoperative Opioid Use in
Colorectal Surgery: An Observational Cohort Study. J Surg Res. 2022 Jan
28;273:226-232. doi: 10.1016/j.jss.2021.12.023. Epub ahead of print. PMID:
35101683.
13: Jones SM, Kim EH, Nadeau KC, Nowak-Wegrzyn A, Wood RA, Sampson HA, Scurlock
AM, Chinthrajah S, Wang J, Pesek RD, Sindher SB, Kulis M, Johnson J, Spain K,
Babineau DC, Chin H, Laurienzo-Panza J, Yan R, Larson D, Qin T, Whitehouse D,
Sever ML, Sanda S, Plaut M, Wheatley LM, Burks AW; Immune Tolerance Network.
Efficacy and safety of oral immunotherapy in children aged 1-3 years with peanut
allergy (the Immune Tolerance Network IMPACT trial): a randomised placebocontrolled
study. Lancet. 2022 Jan 22;399(10322):359-371. doi:
10.1016/S0140-6736(21)02390-4. PMID: 35065784.
14: Quake SR. A decade of molecular cell atlases. Trends Genet. 2022 Jan
29:S0168-9525(22)00004-X. doi: 10.1016/j.tig.2022.01.004. Epub ahead of print.
PMID: 35105475.
15: Eggert LE, He Z, Collins W, Lee AS, Dhondalay G, Jiang SY, Fitzpatrick J,
Snow TT, Pinsky BA, Artandi M, Barman L, Puri R, Wittman R, Ahuja N, Blomkalns
A, O'Hara R, Cao S, Desai M, Sindher SB, Nadeau K, Chinthrajah RS. Asthma
phenotypes, associated comorbidities, and long-term symptoms in COVID-19.
Allergy. 2022 Jan;77(1):173-185. doi: 10.1111/all.14972. Epub 2021 Jun 19. PMID:
34080210; PMCID: PMC8222896.
16: Schmidt AK, Fitzpatrick AD, Schwartzkopf CM, Faith DR, Jennings LK, Coluccio
A, Hunt DJ, Michaels LA, Hargil A, Chen Q, Bollyky PL, Dorward DW, Wachter J,
Rosa PA, Maxwell KL, Secor PR. A Filamentous Bacteriophage Protein Inhibits Type
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
IV Pili To Prevent Superinfection of Pseudomonas aeruginosa. mBio. 2022 Jan
18;13(1):e0244121. doi: 10.1128/mbio.02441-21. Epub ahead of print. PMID:
35038902; PMCID: PMC8764522.
17: Mukherjee R, Tompkins CA, Ostberg NP, Joshi AU, Massis LM, Vijayan V, Gera
K, Monack D, Cornell TT, Hall MW, Mochly-Rosen D, Haileselassie B.
Drp1/Fis1-Dependent Pathologic Fission and Associated Damaged Extracellular
Mitochondria Contribute to Macrophage Dysfunction in Endotoxin Tolerance. Crit
Care Med. 2022 Jan 24. doi: 10.1097/CCM.0000000000005437. Epub ahead of print.
PMID: 35067534.
18: Jasper EA, Oltman SP, Rogers EE, Dagle JM, Murray JC, Kamya M, Kakuru A,
Kajubi R, Ochieng T, Adrama H, Okitwi M, Olwoch P, Jagannathan P, Clark TD,
Dorsey G, Ruel T, Jelliffe-Pawlowski LL, Ryckman KK. Targeted newborn
metabolomics: prediction of gestational age from cord blood. J Perinatol. 2022
Feb;42(2):181-186. doi: 10.1038/s41372-021-01253-w. Epub 2022 Jan 24. PMID:
35067676; PMCID: PMC8830770.
19: Lee A, Scott MKD, Wimmers F, Arunachalam PS, Luo W, Fox CB, Tomai M, Khatri
P, Pulendran B. A molecular atlas of innate immunity to adjuvanted and live
attenuated vaccines, in mice. Nat Commun. 2022 Jan 27;13(1):549. doi:
10.1038/s41467-022-28197-9. PMID: 35087093; PMCID: PMC8795432.
20: Sultan P, Jensen SE, Taylor J, El-Sayed Y, Carmichael S, Cella D, Angst MS,
Gaudilliere B, Lyell DJ, Carvalho B. Proposed domains for assessing postpartum
recovery: a concept elicitation study. BJOG. 2022 Jan;129(1):9-20. doi:
10.1111/1471-0528.16937. Epub 2021 Oct 14. PMID: 34536324.
21: Deer TR, Russo M, Grider JS, Pope J, Hagedorn JM, Weisbein J, Abd-Elsayed A,
Benyamin R, Raso LJ, Patel KV, Provenzano D, Kim PS, Amirdelfan K, Bolash R,
Steegers M, Sullivan R, Verrills P, Carlson J, Kapural L, Diwan S, Barolat G,
Pahapill PA, De Andres J, Raslan AM, Lopez JA, Leong MS, Attias MB, Teddy P,
Green AL, Dario A, Piedimonte F, Chapman KB, Tomycz ND, FitzGerald J, Gatzinsky
K, Varshney V, Gish B, Lindsey BL, Buvanendran A, Lamer TJ, Slavin KV, Levy RM.
The Neurostimulation Appropriateness Consensus Committee (NACC): Recommendations
on Best Practices for Cervical Neurostimulation. Neuromodulation. 2022
Jan;25(1):35-52. doi: 10.1016/j.neurom.2021.10.013. PMID: 35041587.
22: Dzanibe S, Lennard K, Kiravu A, Seabrook MSS, Alinde B, Holmes SP, Blish CA,
Jaspan HB, Gray CM. Stereotypic Expansion of T Regulatory and Th17 Cells during
Infancy Is Disrupted by HIV Exposure and Gut Epithelial Damage. J Immunol. 2022
Jan 1;208(1):27-37. doi: 10.4049/jimmunol.2100503. Epub 2021 Nov 24. PMID:
34819390; PMCID: PMC8702481.
23: Keller A, Gröger L, Tschernig T, Solomon J, Laham O, Schaum N, Wagner V,
Kern F, Schmartz GP, Li Y, Borcherding A, Meier C, Wyss-Coray T, Meese E,
Fehlmann T, Ludwig N. miRNATissueAtlas2: an update to the human miRNA tissue
atlas. Nucleic Acids Res. 2022 Jan 7;50(D1):D211-D221. doi: 10.1093/nar/gkab808.
PMID: 34570238; PMCID: PMC8728130.
24: Okiring J, Epstein A, Namuganga JF, Kamya EV, Nabende I, Nassali M,
Sserwanga A, Gonahasa S, Muwema M, Kiwuwa SM, Staedke SG, Kamya MR, Nankabirwa
JI, Briggs J, Jagannathan P, Dorsey G. Gender difference in the incidence of
malaria diagnosed at public health facilities in Uganda. Malar J. 2022 Jan
21;21(1):22. doi: 10.1186/s12936-022-04046-4. PMID: 35062952; PMCID: PMC8778495.
25: George AF, Luo X, Neidleman J, Hoh R, Vohra P, Thomas R, Shin MG, Lee MJ,
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
Blish CA, Deeks SG, Greene WC, Lee SA, Roan NR. Deep Phenotypic Analysis of
Blood and Lymphoid T and NK Cells From HIV+ Controllers and ART-Suppressed
Individuals. Front Immunol. 2022 Jan 27;13:803417. doi:
10.3389/fimmu.2022.803417. PMID: 35154118; PMCID: PMC8829545.
26: Li Y, Wang AR, Steinberg GK. Safety and Efficacy of Induced Hypertension and
Hypervolemia in Preventing Neurologic Complications After Combined Direct and
Indirect Bypass in Hemorrhagic-Onset Moyamoya Disease. World Neurosurg. 2022 Jan
11:S1878-8750(22)00020-1. doi: 10.1016/j.wneu.2022.01.017. Epub ahead of print.
PMID: 35026459.
27: Mandel M, Li Y, Figueiredo EG, Teixeira MJ, Steinberg GK. Presurgical
Planning with Open-Source Horos Software for Superficial Brain Arteriovenous
Malformations. World Neurosurg. 2022 Jan;157:3-12. doi:
10.1016/j.wneu.2021.09.081. Epub 2021 Sep 25. PMID: 34582999.
28: Lee JW, Su Y, Baloni P, Chen D, Pavlovitch-Bedzyk AJ, Yuan D, Duvvuri VR, Ng
RH, Choi J, Xie J, Zhang R, Murray K, Kornilov S, Smith B, Magis AT, Hoon DSB,
Hadlock JJ, Goldman JD, Price ND, Gottardo R, Davis MM, Hood L, Greenberg PD,
Heath JR. Integrated analysis of plasma and single immune cells uncovers
metabolic changes in individuals with COVID-19. Nat Biotechnol. 2022
Jan;40(1):110-120. doi: 10.1038/s41587-021-01020-4. Epub 2021 Sep 6. PMID:
34489601.
29: Cable J, Rappuoli R, Klemm EJ, Kang G, Mutreja A, Wright GJ, Pizza M, Castro
SA, Hoffmann JP, Alter G, Carfi A, Pollard AJ, Krammer F, Gupta RK, Wagner CE,
Machado V, Modjarrad K, Corey L, B Gilbert P, Dougan G, Lurie N, Bjorkman PJ,
Chiu C, Nemes E, Gordon SB, Steer AC, Rudel T, Blish CA, Sandberg JT, Brennan K,
Klugman KP, Stuart LM, Madhi SA, Karp CL. Innovative vaccine approaches-a
Keystone Symposia report. Ann N Y Acad Sci. 2022 Jan 14. doi:
10.1111/nyas.14739. Epub ahead of print. PMID: 35029310.
30: Thomas D, Cunningham NJ, Shenoy S, Wu JC. Human-induced pluripotent stem
cells in cardiovascular research: current approaches in cardiac differentiation,
maturation strategies, and scalable production. Cardiovasc Res. 2022 Jan
7;118(1):20-36. doi: 10.1093/cvr/cvab115. PMID: 33757124.
31: Macaubas C, Rahman SS, Lavi I, Haddad A, Elias M, Sengupta D, Zisman D,
Mellins ED. High Dimensional Analyses of Circulating Immune Cells in Psoriatic
Arthritis Detects Elevated Phosphorylated STAT3. Front Immunol. 2022 Jan
11;12:758418. doi: 10.3389/fimmu.2021.758418. PMID: 35087513; PMCID: PMC8787828.
32: Zhang J, Walker ME, Sanidad KZ, Zhang H, Liang Y, Zhao E, Chacon-Vargas K,
Yeliseyev V, Parsonnet J, Haggerty TD, Wang G, Simpson JB, Jariwala PB, Beaty
VV, Yang J, Yang H, Panigrahy A, Minter LM, Kim D, Gibbons JG, Liu L, Li Z, Xiao
H, Borlandelli V, Overkleeft HS, Cloer EW, Major MB, Goldfarb D, Cai Z, Redinbo
MR, Zhang G. Microbial enzymes induce colitis by reactivating triclosan in the
mouse gastrointestinal tract. Nat Commun. 2022 Jan 10;13(1):136. doi:
10.1038/s41467-021-27762-y. PMID: 35013263; PMCID: PMC8748916.
33: Olsson N, Jiang W, Adler LN, Mellins ED, Elias JE. Tuning DO:DM ratios
modulates MHC class II immunopeptidomes. Mol Cell Proteomics. 2022 Jan
24:100204. doi: 10.1016/j.mcpro.2022.100204. Epub ahead of print. PMID:
35085787.
34: Beliveau CM, McMahan VM, Arenander J, Angst MS, Kushel M, Torres A, Santos
GM, Coffin PO. Stimulant use for self-management of pain among safety-net
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
patients with chronic non-cancer pain. Subst Abus. 2022;43(1):179-186. doi:
10.1080/08897077.2021.1903654. Epub 2021 Apr 2. PMID: 33798030; PMCID:
PMC8791072.
35: Alavi A, Bogu GK, Wang M, Rangan ES, Brooks AW, Wang Q, Higgs E, Celli A,
Mishra T, Metwally AA, Cha K, Knowles P, Alavi AA, Bhasin R, Panchamukhi S,
Celis D, Aditya T, Honkala A, Rolnik B, Hunting E, Dagan-Rosenfeld O, Chauhan A,
Li JW, Bejikian C, Krishnan V, McGuire L, Li X, Bahmani A, Snyder MP. Real-time
alerting system for COVID-19 and other stress events using wearable data. Nat
Med. 2022 Jan;28(1):175-184. doi: 10.1038/s41591-021-01593-2. Epub 2021 Nov 29.
PMID: 34845389; PMCID: PMC8799466.
36: Ram-Mohan N, Kim D, Zudock EJ, Hashemi MM, Tjandra KC, Rogers AJ, Blish CA,
Nadeau KC, Newberry JA, Quinn JV, O'Hara R, Ashley E, Nguyen H, Jiang L, Hung P,
Blomkalns AL, Yang S; Stanford COVID-19 Biobank Study Group. SARS-CoV-2 RNAemia
Predicts Clinical Deterioration and Extrapulmonary Complications from COVID-19.
Clin Infect Dis. 2022 Jan 29;74(2):218-226. doi: 10.1093/cid/ciab394. PMID:
33949665; PMCID: PMC8135992.
37: Yiu G, Rasmussen TK, Tsai BL, Diep VK, Haddon DJ, Tsoi J, Miller GD, Comin-
Anduix B, Deleuran B, Crooks GM, Utz PJ. High Interferon Signature Leads to
Increased STAT1/3/5 Phosphorylation in PBMCs From SLE Patients by Single Cell
Mass Cytometry. Front Immunol. 2022 Jan 28;13:833636. doi:
10.3389/fimmu.2022.833636. PMID: 35185925; PMCID: PMC8851522.
38: Ivison GT, Vendrame E, Martínez-Colón GJ, Ranganath T, Vergara R, Zhao NQ,
Martin MP, Bendall SC, Carrington M, Cyktor JC, McMahon DK, Eron J, Jones RB,
Mellors JW, Bosch RJ, Gandhi RT, Holmes S, Blish CA; ACTG 5321 Team. Natural
Killer Cell Receptors and Ligands Are Associated With Markers of HIV-1
Persistence in Chronically Infected ART Suppressed Patients. Front Cell Infect
Microbiol. 2022 Feb 10;12:757846. doi: 10.3389/fcimb.2022.757846. PMID:
35223535; PMCID: PMC8866573.
39: Brewer RC, Ramadoss NS, Lahey LJ, Jahanbani S, Robinson WH, Lanz TV.
BNT162b2 vaccine induces divergent B cell responses to SARS-CoV-2 S1 and S2. Nat
Immunol. 2022 Jan;23(1):33-39. doi: 10.1038/s41590-021-01088-9. Epub 2021 Nov
30. PMID: 34848871; PMCID: PMC8776031.
40: Bigder M, Choudhri O, Gupta M, Gummidipundi S, Han SS, Church EW, Chang SD,
Levy RP, Do HM, Marks MP, Steinberg GK. Radiosurgery as a microsurgical adjunct:
outcomes after microsurgical resection of intracranial arteriovenous
malformations previously treated with stereotactic radiosurgery. J Neurosurg.
2021 Jun 11;136(1):185-196. doi: 10.3171/2020.9.JNS201538. PMID: 34116503.
41: Goshua A, Akdis C, Nadeau KC. World Health Organization global air quality
guideline recommendations: Executive summary. Allergy. 2022 Jan 21. doi:
10.1111/all.15224. Epub ahead of print. PMID: 35060140.
42: Pruss KM, Enam F, Battaglioli E, DeFeo M, Diaz OR, Higginbottom SK, Fischer
CR, Hryckowian AJ, Van Treuren W, Dodd D, Kashyap P, Sonnenburg JL. Oxidative
ornithine metabolism supports non-inflammatory C. difficile colonization. Nat
Metab. 2022 Jan;4(1):19-28. doi: 10.1038/s42255-021-00506-4. Epub 2022 Jan 6.
PMID: 34992297; PMCID: PMC8803604.
43: Reiss JD, Peterson LS, Nesamoney SN, Chang AL, Pasca AM, Marić I, Shaw GM,
Gaudilliere B, Wong RJ, Sylvester KG, Bonifacio SL, Aghaeepour N, Gibbs RS,
Stevenson DK. Perinatal infection, inflammation, preterm birth, and brain
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
injury: A review with proposals for future investigations. Exp Neurol. 2022 Jan
23;351:113988. doi: 10.1016/j.expneurol.2022.113988. Epub ahead of print. PMID:
35081400.
44: Aranda-Díaz A, Ng KM, Thomsen T, Real-Ramírez I, Dahan D, Dittmar S,
Gonzalez CG, Chavez T, Vasquez KS, Nguyen TH, Yu FB, Higginbottom SK, Neff NF,
Elias JE, Sonnenburg JL, Huang KC. Establishment and characterization of stable,
diverse, fecal-derived in vitro microbial communities that model the intestinal
microbiota. Cell Host Microbe. 2022 Feb 9;30(2):260-272.e5. doi:
10.1016/j.chom.2021.12.008. Epub 2022 Jan 19. PMID: 35051349.
45: Lowsky R, Strober S. Establishment of Chimerism and Organ Transplant
Tolerance in Laboratory Animals: Safety and Efficacy of Adaptation to Humans.
Front Immunol. 2022 Feb 10;13:805177. doi: 10.3389/fimmu.2022.805177. PMID:
35222384; PMCID: PMC8866443.
46: Yaddanapudi K, Stamp BF, Subrahmanyam PB, Smolenkov A, Waigel SJ, Gosain R,
Egger ME, Martin RCG, Buscaglia R, Maecker HT, McMasters KM, Chesney JA. Single-
Cell Immune Mapping of Melanoma Sentinel Lymph Nodes Reveals an Actionable
Immunotolerant Microenvironment. Clin Cancer Res. 2022 Jan 19. doi:
10.1158/1078-0432.CCR-21-0664. Epub ahead of print. PMID: 35046061.
47: Vaidyanathan S, Baik R, Chen L, Bravo DT, Suarez CJ, Abazari SM, Salahudeen
AA, Dudek AM, Teran CA, Davis TH, Lee CM, Bao G, Randell SH, Artandi SE, Wine
JJ, Kuo CJ, Desai TJ, Nayak JV, Sellers ZM, Porteus MH. Targeted replacement of
full-length CFTR in human airway stem cells by CRISPR-Cas9 for pan-mutation
correction in the endogenous locus. Mol Ther. 2022 Jan 5;30(1):223-237. doi:
10.1016/j.ymthe.2021.03.023. Epub 2021 Mar 29. PMID: 33794364; PMCID:
PMC8753290.
48: Bankova AK, Caveney J, Yao B, Ramos TL, Bögeholz J, Heydari K, Diaz N,
Jackson ML, Lowsky R, Brown JW, Johnston L, Rezvani AR, Frank MJ, Muffly L, Weng
WK, Sidana S, Negrin RS, Miklos DB, Shiraz P, Meyer EH, Shizuru JA, Arai S.
Real-World Experience of Cryopreserved Allogeneic Hematopoietic Grafts during
the COVID-19 Pandemic: A Single-Center Report. Transplant Cell Ther. 2022 Jan
15:S2666-6367(22)00030-6. doi: 10.1016/j.jtct.2022.01.010. Epub ahead of print.
PMID: 35042013; PMCID: PMC8760704.
49: Liu R, Jiang W, Li Y, Mellins ED. RIPPA: Identification of MHC-II Binding
Peptides from Antigen Using a Yeast Display-Based Approach. Curr Protoc. 2022
Jan;2(1):e350. doi: 10.1002/cpz1.350. PMID: 35041265.
50: Wirz OF, Jansen K, Satitsuksanoa P, van de Veen W, Tan G, Sokolowska M,
Mirer D, Stanić B, Message SD, Kebadze T, Glanville N, Mallia P, Gern JE,
Papadopoulos N, Akdis CA, Johnston SL, Nadeau K, Akdis M. Experimental
rhinovirus infection induces an antiviral response in circulating B cells which
is dysregulated in patients with asthma. Allergy. 2022 Jan;77(1):130-142. doi:
10.1111/all.14985. Epub 2021 Jul 16. PMID: 34169553.
51: Chin ET, Leidner D, Zhang Y, Long E, Prince L, Schrag SJ, Verani JR, Wiegand
RE, Alarid-Escudero F, Goldhaber-Fiebert JD, Studdert DM, Andrews JR, Salomon
JA. Effectiveness of COVID-19 vaccines among incarcerated people in California
state prisons: retrospective cohort study. Clin Infect Dis. 2022 Jan
27:ciab1032. doi: 10.1093/cid/ciab1032. Epub ahead of print. PMID: 35083482;
PMCID: PMC8807311.
52: Jarrell JA, Baker MC, Perugino CA, Liu H, Bloom MS, Maehara T, Wong HH, Lanz
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
TV, Adamska JZ, Kongpachith S, Sokolove J, Stone JH, Pillai SS, Robinson WH.
Neutralizing anti-IL-1 receptor antagonist autoantibodies induce inflammatory
and fibrotic mediators in IgG4-related disease. J Allergy Clin Immunol. 2022
Jan;149(1):358-368. doi: 10.1016/j.jaci.2021.05.002. Epub 2021 May 8. PMID:
33974929; PMCID: PMC8573062.
53: Akter A, Ahmed T, Tauheed I, Akhtar M, Rahman SIA, Khaton F, Ahmmed F,
Ferdous J, Afrad MH, Kawser Z, Hossain M, Khondaker R, Hasnat MA, Sumon MA,
Rashed A, Ghosh S, Calderwood SB, Charles RC, Ryan ET, Khatri P, Maecker HT,
Obermoser G, Pulendran B, Clemens JD, Banu S, Shirin T, LaRocque RC, Harris JB,
Bhuiyan TR, Chowdhury F, Qadri F. Disease characteristics and serological
responses in patients with differing severity of COVID-19 infection: A
longitudinal cohort study in Dhaka, Bangladesh. PLoS Negl Trop Dis. 2022 Jan
4;16(1):e0010102. doi: 10.1371/journal.pntd.0010102. PMID: 34982773; PMCID:
PMC8759637.
54: Ghosh D, Pham TD, Nanaware PP, Sengupta D, Adler LN, Li CG, He X, O'Mara ME,
Kantor AB, Nguyen KD, Yang Y, Eisenlohr LC, Jensen PE, Herzenberg LA, Stern LJ,
Boyd SD, Ghosn EEB, Mellins ED. Regulation of the BCR signalosome by the class
II peptide editor, H2-M, affects the development and repertoire of innate-like B
cells. Cell Rep. 2022 Jan 25;38(4):110200. doi: 10.1016/j.celrep.2021.110200.
PMID: 35081339.
55: Murugesan K, Jagannathan P, Altamirano J, Maldonado YA, Bonilla HF, Jacobson
KB, Parsonnet J, Andrews JR, Shi RZ, Boyd S, Pinsky BA, Singh U, Banaei N. Long
Term Accuracy of SARS-CoV-2 Interferon-γ Release Assay and its Application in
Household Investigation. Clin Infect Dis. 2022 Jan 25:ciac045. doi:
10.1093/cid/ciac045. Epub ahead of print. PMID: 35079772; PMCID: PMC8807306.
56: Reveron-Thornton R, Scott BJ, Post D, Caulfield AF, Werbaneth K, Hovsepian
DA, Spiegel J, Miklos D, Thomas RP, Patel CB. Recurrent Status Epilepticus in
the Setting of Chimeric Antigen Receptor (CAR)-T Cell Therapy. Neurohospitalist.
2022 Jan;12(1):74-79. doi: 10.1177/19418744211000980. Epub 2021 Mar 11. PMID:
34950390; PMCID: PMC8689529.
57: Maecker HT, Siebert JC, Rosenberg-Hasson Y, Koran LM, Ramalho M, Semelka RC.
Dynamic Serial Cytokine Measurements During Intravenous Ca-DTPA Chelation in
Gadolinium Deposition Disease and Gadolinium Storage Condition: A Pilot Study.
Invest Radiol. 2022 Jan 1;57(1):71-76. doi: 10.1097/RLI.0000000000000803. PMID:
34120127; PMCID: PMC8664920.
58: Pannu J, Sandbrink JB, Watson M, Palmer MJ, Relman DA. Protocols and risks:
when less is more. Nat Protoc. 2022 Jan;17(1):1-2. doi:
10.1038/s41596-021-00655-6. Epub 2021 Dec 6. PMID: 34873329.
59: Verdonk F, Hsu JL, Gaudilliere B. From Mass to Flow: Emerging Sepsis
Diagnostics Based on Flow Cytometry Analysis of Neutrophils. Am J Respir Crit
Care Med. 2022 Jan 1;205(1):2-4. doi: 10.1164/rccm.202110-2291ED. PMID:
34788202; PMCID: PMC8865592.
60: Theisen TC, Boothroyd JC. Transcriptional signatures of clonally derived
Toxoplasma tachyzoites reveal novel insights into the expression of a family of
surface proteins. PLoS One. 2022 Feb 25;17(2):e0262374. doi:
10.1371/journal.pone.0262374. PMID: 35213559; PMCID: PMC8880437.
61: Cho S, Lee C, Lai C, Zhuge Y, Haddad F, Fowler M, Sallam K, Wu JC.
Heterozygous LMNA mutation-carrying iPSC lines from three cardiac laminopathy
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
patients. Stem Cell Res. 2022 Jan 3;59:102657. doi: 10.1016/j.scr.2022.102657.
Epub ahead of print. PMID: 34999423.
62: Muir RK, Guerra M, Bogyo MM. Activity-Based Diagnostics: Recent Advances in
the Development of Probes for Use with Diverse Detection Modalities. ACS Chem
Biol. 2022 Feb 18;17(2):281-291. doi: 10.1021/acschembio.1c00753. Epub 2022 Jan
13. PMID: 35026106.
63: Maldonado YA, O'Leary S, Hotez P. Vaccine Exemptions and the Risk of
Continued Disease Outbreaks. Pediatrics. 2022 Jan 1;149(1):e2021054369. doi:
10.1542/peds.2021-054369. PMID: 34866155.
64: Verma R, Kim E, Degner N, Walter KS, Singh U, Andrews JR. Variation in
Severe Acute Respiratory Syndrome Coronavirus 2 Bioaerosol Production in Exhaled
Breath. Open Forum Infect Dis. 2021 Dec 1;9(1):ofab600. doi:
10.1093/ofid/ofab600. PMID: 35028332; PMCID: PMC8753034.
65: Nguyen DI, Sindher SB, Chinthrajah RS, Nadeau K, Davis CM. Shrimp-allergic
patients in a multi-food oral immunotherapy trial. Pediatr Allergy Immunol. 2022
Jan;33(1):e13679. doi: 10.1111/pai.13679. Epub 2021 Oct 28. PMID: 34655480.
66: Brar N, Spinner MA, Baker MC, Advani RH, Natkunam Y, Lewis DB, Silva O.
Increased double-negative αβ+ T-cells reveal adult-onset autoimmune
lymphoproliferative syndrome in a patient with IgG4-related disease.
Haematologica. 2022 Jan 1;107(1):347-350. doi: 10.3324/haematol.2021.279297.
PMID: 34474549; PMCID: PMC8719087.
67: Chang AY, Barry M, Bendavid E, Watkins D, Beaton AZ, Lwabi P, Ssinabulya I,
Longenecker CT, Okello E. Mortality Along the Rheumatic Heart Disease Cascade of
Care in Uganda. Circ Cardiovasc Qual Outcomes. 2022 Jan;15(1):e008445. doi:
10.1161/CIRCOUTCOMES.121.008445. Epub 2022 Jan 18. PMID: 35041475.
68: Garcia P, Anand S, Han J, Montez-Rath ME, Sun S, Shang T, Parsonnet J,
Chertow GM, Schiller B, Abra G. COVID-19 Vaccine Type and Humoral Immune
Response in Patients Receiving Dialysis. J Am Soc Nephrol. 2022 Jan;33(1):33-37.
doi: 10.1681/ASN.2021070936. Epub 2021 Oct 13. PMID: 34645698; PMCID:
PMC8763174.
69: Jahng JWS, Wu JC. Cardiac reprogramming via chromatin remodeling by CRISPR
activation. Mol Ther. 2022 Jan 5;30(1):6-7. doi: 10.1016/j.ymthe.2021.12.005.
Epub 2021 Dec 10. PMID: 34895515; PMCID: PMC8753518.
70: Röltgen K, Nielsen SCA, Silva O, Younes SF, Zaslavsky M, Costales C, Yang F,
Wirz OF, Solis D, Hoh RA, Wang A, Arunachalam PS, Colburg D, Zhao S, Haraguchi
E, Lee AS, Shah MM, Manohar M, Chang I, Gao F, Mallajosyula V, Li C, Liu J,
Shoura MJ, Sindher SB, Parsons E, Dashdorj NJ, Dashdorj ND, Monroe R, Serrano
GE, Beach TG, Chinthrajah RS, Charville GW, Wilbur JL, Wohlstadter JN, Davis MM,
Pulendran B, Troxell ML, Sigal GB, Natkunam Y, Pinsky BA, Nadeau KC, Boyd SD.
Immune imprinting, breadth of variant recognition, and germinal center response
in human SARS-CoV-2 infection and vaccination. Cell. 2022 Jan
25:S0092-8674(22)00076-9. doi: 10.1016/j.cell.2022.01.018. Epub ahead of print.
PMID: 35148837; PMCID: PMC8786601.
71: Avolio AW, Contegiacomo A, Agnes S, Marrone G, Moschetta G, Miele L, Melcher
ML. Availability of a Web and Smartphone Application to Stratify the Risk of of
Early Allograft Failure Requiring Liver Retransplantation. Hepatol Commun. 2022
Jan;6(1):247-248. doi: 10.1002/hep4.1754. Epub 2021 Jun 22. PMID: 34558843;
file:///C/Users/mking/AppData/Local/Temp/summary-stanfordaf-set-1.txt[3/8/2022 9:27:42 AM]
PMCID: PMC8710784.
72: Baker MC, Mallajosyula V, Davis MM, Boyd SD, Nadeau KC, Robinson WH.
Effective viral vector response to SARS-CoV-2 booster vaccination in a patient
with rheumatoid arthritis after initial ineffective response to messenger RNA
vaccine. Arthritis Rheumatol. 2022 Mar;74(3):541-542. doi: 10.1002/art.41978.
Epub 2022 Jan 18. PMID: 34514750; PMCID: PMC8652858.