Influenza U19 > Publications
- Clinical Pharmacology and Therapeutics, 2011 August.
Applications of translational bioinformatics in
transplantation.
Khatri, P; Sarwal, M M; Butte, A J
- Nature Reviews. Immunology, 2011 August.
Interrogating the repertoire: broadening the scope of
peptide-MHC multimer analysis.
Davis, Mark M; Altman, John D; Newell, Evan W
- Cell Host & Microbe. 2011 June.
Toxoplasma polymorphic effectors determine
macrophage polarization and intestinal inflammation.
Jensen, Kirk D C; Wang, Yiding; Wojno, Elia D Tait;
Shastri, Anjali J; Hu, Kenneth; Cornel, Lara; Boedec,
Erwan; Ong, Yi-Ching; Chien, Yueh-hsiu; Hunter,
Christopher A; Boothroyd, John C; Saeij, Jeroen P J
- Science (New York, NY) 2011 May.
Single-cell mass cytometry of differential immune and
drug responses across a human hematopoietic
continuum.
Bendall, Sean C; Simonds, Erin F; Qiu, Peng; Amir, El-ad
D; Krutzik, Peter O; Finck, Rachel; Bruggner, Robert V;
Melamed, Rachel; Trejo, Angelica; Ornatsky, Olga I;
Balderas, Robert S; Plevritis, Sylvia K; Sachs, Karen;
Pe'er, Dana; Tanner, Scott D; Nolan, Garry P
- Journal of Immunological Methods, 2011 February.
Plasmablast-derived polyclonal antibody response after
influenza vaccination.
He, Xiao-Song; Sasaki, Sanae; Narvaez, Carlos F;
Zhang, Caiqiu; Liu, Hui; Woo, Jennifer C; Kemble,
George W; Dekker, Cornelia L; Davis, Mark M;
Greenberg, Harry B
- The Pediatric Infectious Disease Journal, 2011 January.
Cross-reactive neutralizing antibody against pandemic
2009 H1N1 influenza a virus in intravenous
immunoglobulin preparations.
Hong, David K; Tremoulet, Adriana H; Burns, Jane C;
Lewis, David B
- Nature Biotechnology, 2011 October.
Extracting a cellular hierarchy from high-dimensional
cytometry data with SPADE
Qiu, Peng; Simonds, Erin F; Bendall, Sean C; Gibbs Jr,
Kenneth D; Bruggner, Robert V; Linderman, Michael D;
Sachs, Karen; Nolan, Garry P; Plevritis, Sylvia K
- Cytometry. Part A: the Journal of the International Society for Analytical Cytology. 2010 Nov.
Tyramide signal amplification for analysis of kinase
activity by intracellular flow cytometry.
Clutter, Matthew R; Heffner, Garrett C; Krutzik, Peter O;
Sachen, Kacey L; Nolan, Garry P
- Proceedings of the National Academy of Sciences of the United States of America 2010 October.
Duration of antigen receptor signaling determines T-cell
tolerance or activation.
Katzman, Shoshana D; O'Gorman, William E; Villarino,
Alejandro V; Gallo, Eugenio; Friedman, Rachel S;
Krummel, Matthew F; Nolan, Garry P; Abbas, Abul K
- Cell Host & Microbe, 2010 August.
Alternate mechanisms of initial pattern recognition drive
differential immune responses to related poxviruses.
O'Gorman, William E; Sampath, Padma; Simonds, Erin F;
Sikorski, Rachel; O'Malley, Mark; Krutzik, Peter O; Chen,
Hannah; Panchanathan, Vijay; Chaudhri, Geeta;
Karupiah, Gunasegaran; Lewis, David B; Thorne, Steve
H; Nolan, Garry P
- Blood 2010 August.
Novel mutations in the inhibitory adaptor protein LNK
drive JAK-STAT signaling in patients with
myeloproliferative neoplasms.
Oh, Stephen T; Simonds, Erin F; Jones, Carol; Hale,
Matthew B; Goltsev, Yury; Gibbs Jr, Kenneth D; Merker,
Jason D; Zehnder, James L; Nolan, Garry P; Gotlib,Jason
- Journal of Virology, 2010, March.
Naturally occurring human monoclonal antibodies
neutralize both 1918 and 2009 pandemic influenza A
(H1N1) viruses.
Krause, Jens C; Tumpey, Terrence M; Huffman, Chelsey
J; McGraw, Patricia A; Pearce, Melissa B; Tsibane,
Tshidi; Hai, Rong; Basler, Christopher F; Crowe Jr,James E
- Nature Methods. 2010 April.
Cell type-specific gene expression differences in complex
tissues.
Shen-Orr, Shai S; Tibshirani, Robert; Khatri, Purvesh;
Bodian, Dale L; Staedtler, Frank; Perry, Nicholas M;
Hastie, Trevor; Sarwal, Minnie M; Davis, Mark M; Butte,Atul J
- Nature Methods. 2009 July.
Simultaneous detection of many T-cell specificities using
combinatorial tetramer staining.
Newell, Evan W; Klein, Lawrence O; Yu, Wong; Davis,
Mark M
- Journal of Computational Biology: a Journal of Computational Molecular Cell Biology. 2009 Feb.
Learning signaling network structures with sparsely
distributed data.
Sachs, Karen; Itani, Solomon; Carlisle, Jennifer; Nolan,
Garry P; Pe'er, Dana; Lauffenburger, Douglas A
- The Journal of Biological Chemistry. 2009 January.
Regulation of chemerin bioactivity by plasma
carboxypeptidase N, carboxypeptidase B (activated
thrombin-activable fibrinolysis inhibitor), and platelets.
Du, Xiao-Yan; Zabel, Brian A; Myles, Timothy; Allen,
Samantha J; Handel, Tracy M; Lee, Peter P; Butcher,
Eugene C; Leung, Lawrence L
- Pacific Symposium on Biocomputing. 2009.
Learning cyclic signaling pathway strLearning cyclic signaling pathway structures while
minimizing data requirements.
Sachs, K; Itani, S; Fitzgerald, J; Wille, L; Schoeberl, B;
Dahleh, M A; Nolan, G P
- Pacific Symposium on Biocomputing. 2009.
Towards a cytokine-cell interaction knowledgebase of the
adaptive immune system.
Shen-Orr, Shai S; Goldberger, Ofir; Garten, Yael;
Rosenberg-Hasson, Yael; Lovelace, Patricia A;
Hirschberg, David L; Altman, Russ B; Davis, Mark M;
Butte, Atul J
- Current Opinion in Immunology. 2009 April.
Thymic maturation determines gammadelta T cell
function, but not their antigen specificities.
Jensen, Kirk D C; Chien, Yueh-Hsiu
- Immunity. 2008 December.
A prescription for human immunology.
Davis, Mark M
- Journal of Immunology (Baltimore, Md:1950) 2008 December.
Modeling the role of homologous receptor desensitization
in cell gradient sensing.
Lin, Francis; Butcher, Eugene C
- Nature Immunology. 2008 October.
Shouts, whispers and the kiss of death: directional
secretion in T cells.
Huse, Morgan; Quann, Emily J; Davis, Mark M
- Nature. 2008 September.
Neutralizing antibodies derived from the B cells of 1918
influenza pandemic survivors.
Yu, Xiaocong; Tsibane, Tshidi; McGraw, Patricia A;
House, Frances S; Keefer, Christopher J; Hicar, Mark D;
Tumpey, Terrence M; Pappas, Claudia; Perrone, Lucy A;
Martinez, Osvaldo; Stevens, James; Wilson, Ian A;
Aguilar, Patricia V; Altschuler, Eric L; Basler, Christopher
F; Crowe Jr, James E
- Nature Immunology. 2008 September.
Environmental cues, dendritic cells and the programming
of tissue-selective lymphocyte trafficking.
Sigmundsdottir, Hekla; Butcher, Eugene C
- Journal of Immunology (Baltimore, Md; 1950) 2008 August.
Lymphocyte electrotaxis in vitro and in vivo.
Lin, Francis; Baldessari, Fabio; Gyenge, Christina
Crenguta; Sato, Tohru; Chambers, Robert D; Santiago,
Juan G; Butcher, Eugene C