Scott Boyd, MD PhD

Publications

• Measurement and Clinical Monitoring of Human Lymphocyte Clonality by Massively Parallel V-D-J Pyrosequencing Boyd SD, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, Miklos DB, Zehnder JL, Fire AZ. Science Translational Medicine. 2009; 1 (12)
• Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Liao HX, Lynch R, Zhou T, Gao F, Alam SM, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Mullikin JC, Gnanakaran S, Hraber P, Wiehe K, Kelsoe G, Yang G, Xia SM, Montefiori DC, Parks R, Lloyd KE, Scearce RM, Soderberg KA, Cohen M, Kamanga G, Louder MK, Tran LM, Chen Y, Cai F, Chen S, Moquin S, Du X, Joyce MG, Srivatsan S, Zhang B, Zheng A, Shaw GM, Hahn BH, Kepler TB, Korber BT, Kwong PD, Mascola JR, Haynes BF. Nature. 2013; 496 (7446): 469-76
• Diagnostic applications of high-throughput DNA sequencing. Boyd SD, Annu Rev Pathol. 2013: 8 381-410
• Integration of genomic medicine into pathology residency training: the stanford open curriculum. Schrijver I, Natkunam Y, Galli S, Boyd SD. J Mol Diagn. 2013; 15 (2): 141-8
• Selective immunophenotyping for diagnosis of B-cell neoplasms: immunohistochemistry and flow cytometry strategies and results. Boyd SD, Natkunam Y, Allen JR, Warnke RA. Appl Immunohistochem Mol Morphol. 2013; 21 (2): 116-31
• New tools for classification and monitoring of autoimmune diseases. Maecker HT, Lindstrom TM, Robinson WH, Utz PJ, Hale M, Boyd SD, Shen-Orr SS, Fathman CG. Nat Rev Rheumatol. 2012; 8 (6): 317-28
• The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements. Kidd MJ, Chen Z, Wang Y, Jackson KJ, Zhang L, Boyd SD, Fire AZ, Tanaka MM, Gaëta BA, Collins AM. J Immunol. 2012; 188 (3): 1333-40
• Determinants of nucleosome organization in primary human cells. Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Nature. 2011; 474 (7352): 516-20
• High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, Miklos DB. Proc Natl Acad Sci U S A. 2011; 108 (52): 21194-9
• Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated. Liao HX, Chen X, Munshaw S, Zhang R, Marshall DJ, Vandergrift N, Whitesides JF, Lu X, Yu JS, Hwang KK, Gao F, Markowitz M, Heath SL, Bar KJ, Goepfert PA, Montefiori DC, Shaw GC, Alam SM, Margolis DM, Denny TN, Boyd SD, Marshal E, Egholm M, Simen BB, Hanczaruk B, Fire AZ, Voss G, Kelsoe G, Tomaras GD, Moody MA, Kepler TB, Haynes BF. J Exp Med. 2011; 208 (11): 2237-49
• Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset. Jackson KJ, Boyd S, Gaëta BA, Collins AM. Bioinformatics. 2010; 26 (24): 3129-30
• Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. Boyd SD, Gaëta BA, Jackson KJ, Fire AZ, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, Miklos DB, Zehnder JL, Collins AM. J Immunol. 2010; 184 (12): 6986-92
• A comparison of two methods for screening CEBPA mutations in patients with acute myeloid leukemia. Ahn JY, Seo K, Weinberg O, Boyd SD, Arber DA. J Mol Diagn. 2009; 11 (4): 319-23
• Features of hemolysis due to Clostridium perfringens infection. Boyd SD, Mobley BC, Regula DP, Arber DA. Int J Lab Hematol. 2009; 31 (3): 364-7
• Everything you wanted to know about small RNA but were afraid to ask. Boyd SD, Lab Invest. 2008; 88 (6): 569-78
• Alloimmunization to red blood cell antigens affects clinical outcomes in liver transplant patients. Boyd SD, Stenard F, Lee DK, Goodnough LT, Esquivel CO, Fontaine MJ. Liver Transpl. 2007; 13 (12): 1654-61
• An intact HDM2 RING-finger domain is required for nuclear exclusion of p53. Boyd SD, Tsai KY, Jacks T. Nat Cell Biol. 2000; 2 (9): 563-8
• Inhibition of cyclin-dependent kinase 2 by p21 is necessary for retinoblastoma protein-mediated G1 arrest after gamma-irradiation. Brugarolas J, Moberg K, Boyd SD, Taya Y, Jacks T, Lees JA. Proc Natl Acad Sci U S A. 1999; 96 (3): 1002-7
• The role of CTLA-4 in regulating Th2 differentiation. Oosterwegel MA, Mandelbrot DA, Boyd SD, Lorsbach RB, Jarrett DY, Abbas AK, Sharpe AH. J Immunol. 1999; 163 (5): 2634-9
• B7-1 and B7-2 have overlapping, critical roles in immunoglobulin class switching and germinal center formation. Borriello F, Sethna MP, Boyd SD, Schweitzer AN, Tivol EA, Jacoby D, Strom TB, Simpson EM, Freeman GJ, Sharpe AH. Immunity. 1997; 6 (3): 303-13
• CTLA4Ig prevents lymphoproliferation and fatal multiorgan tissue destruction in CTLA-4-deficient mice. Tivol EA, Boyd SD, McKeon S, Borriello F, Nickerson P, Strom TB, Sharpe AH. J Immunol. 1997; 158 (11): 5091-4